GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002784-TA|BGIBMGA002784-PA|IPR003533|Doublecortin
         (196 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   5.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   6.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   6.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 68   PPRPIRTEPASRYANLNYWK 87
            PP  IR E   +++ + YWK
Sbjct: 998  PPTSIRVETNDQHSLVVYWK 1017


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 90  RVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLS 125
           R  FY+  D F P    RF        + +L+D +S
Sbjct: 497 RFLFYKPEDIFRPNTYNRFLAATGGDHVISLIDEIS 532


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 99  PFHPGVEFRF 108
           P HPG+ FR+
Sbjct: 156 PIHPGMTFRY 165


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 160 SSYKTFKYSYRSVVLRRYAIATFV 183
           S YK +KY+Y  V +   A   ++
Sbjct: 38  SFYKIYKYTYNIVAVSLTAYMVYI 61


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.141    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,796
Number of Sequences: 317
Number of extensions: 1483
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 196
length of database: 114,650
effective HSP length: 54
effective length of query: 142
effective length of database: 97,532
effective search space: 13849544
effective search space used: 13849544
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 41 (20.6 bits)