GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002784-TA|BGIBMGA002784-PA|IPR003533|Doublecortin
         (196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1090 - 10009008-10009098,10009336-10009439,10009608-100097...    28   5.8  
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376     28   5.8  
07_03_0757 - 21280001-21280348,21280382-21280642,21281718-212818...    27   7.6  

>07_01_1090 -
           10009008-10009098,10009336-10009439,10009608-10009724,
           10009826-10009916,10010581-10010735,10010970-10011542,
           10011851-10011992,10012080-10012123
          Length = 438

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 118 DALLDRLSERLELPRGARFIFGMDGDRKYRLEELED 153
           D L++ + E   L    RFI G DG ++ R+EE+ +
Sbjct: 238 DLLVEVIPEVCRLFPKVRFIVGGDGPKRVRIEEMRE 273


>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
          Length = 798

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 93  FYRNGDPFHPGVEFRFKPGRDLASIDALLDRLS-ERLELPRGA 134
           ++RN  P      FR  P RDLAS +AL+  LS  R  LP  A
Sbjct: 58  YFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAA 100


>07_03_0757 -
           21280001-21280348,21280382-21280642,21281718-21281843,
           21281907-21282111,21282196-21282317
          Length = 353

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 137 IFGMDGDRKYRLEELEDGASYV---VSSYKTFKYSYRSVVLRRYAIATFVARL--HYMDQ 191
           + G   +R Y  E+ ED  S V    SSY T  Y  R  V RR++  T VA++  H + +
Sbjct: 71  VTGQRNNRPYLFEQNEDIISTVSIPASSYSTMWYYLRLQVWRRWSDGT-VAKMIDHSLGK 129

Query: 192 EY 193
            Y
Sbjct: 130 NY 131


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.141    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,932,899
Number of Sequences: 37544
Number of extensions: 195357
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 3
length of query: 196
length of database: 14,793,348
effective HSP length: 78
effective length of query: 118
effective length of database: 11,864,916
effective search space: 1400060088
effective search space used: 1400060088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)