GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002784-TA|BGIBMGA002784-PA|IPR003533|Doublecortin
         (196 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15)                   56   3e-08
SB_46382| Best HMM Match : DCX (HMM E-Value=9.4e-15)                   54   1e-07
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   53   2e-07
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)                     48   5e-06
SB_19020| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_14170| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_17267| Best HMM Match : WSC (HMM E-Value=2e-12)                     28   4.5  
SB_16027| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14)        28   5.9  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   28   5.9  
SB_16373| Best HMM Match : L51_S25_CI-B8 (HMM E-Value=3.6)             27   7.8  

>SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15)
          Length = 347

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 72  IRTEPASRYANLNYWKARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLELP 131
           IRT   +   + +   A  VT Y+NG+P  PG +    P R + ++DA LD+++  ++L 
Sbjct: 214 IRTAKKTFQGSTSSMAAPTVTIYKNGEPKFPGKKVVVNP-RQVRNMDACLDKITREMKLK 272

Query: 132 RGARFIFGMDGDRKY-RLEELEDGASYVVSSYKTFK 166
             AR +    G  K  +LE++E G  YVV   + FK
Sbjct: 273 TAARSLKTPTGGHKIDKLEKIEPGGQYVVCGLEAFK 308


>SB_46382| Best HMM Match : DCX (HMM E-Value=9.4e-15)
          Length = 136

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 88  ARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLELPRGARFIFGMDGDRKY- 146
           A  VT Y+NG+P  PG +    P R + ++DA LD+++  ++L   AR +    G  K  
Sbjct: 3   APTVTIYKNGEPKFPGKKVVVNP-RQVRNMDACLDKITREMKLKTAARSLKTPTGGHKID 61

Query: 147 RLEELEDGASYVVSSYKTFK 166
           +LE++E G  YVV   + FK
Sbjct: 62  KLEKIEPGGQYVVCGLEAFK 81


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 88  ARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLELPRGARFIFGMDGDRKYR 147
           +++V FYRNGD    G        +   S ++L + LS R+ LP G R++F M+G     
Sbjct: 125 SKKVFFYRNGDKHFKGRTL-IVTKQKYGSFESLEEDLSARIPLPYGVRYVFDMEGHLVTD 183

Query: 148 LEELEDGASYVVSS 161
           + +LEDG  YV SS
Sbjct: 184 INQLEDGGVYVCSS 197


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 88  ARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLELPRGA-RFIFGMD-GDRK 145
           A+++ FYRNGD F  G++      R     D+LL  LS +++L  GA R+IF  + G+  
Sbjct: 338 AKQIMFYRNGDRFFSGLKLAVSSER-YKEFDSLLTELSAKIDLQTGAVRYIFNSETGNEV 396

Query: 146 YRLEELEDGASYVVSSYKTFK 166
             + EL+ G SYV SS   F+
Sbjct: 397 QDVTELQYGVSYVCSSSNHFQ 417


>SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 759

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 88  ARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLELPRGARFIFGMD-GDRKY 146
           ++ V FY+NGD F         P R   S D LL  LS + ELP+G R++   + G +  
Sbjct: 20  SKTVIFYKNGDVFSK-YPVTITP-RKYRSFDILLAELSMKTELPQGVRYLLDKENGAQVK 77

Query: 147 RLEELEDGASYVVSSYKTFK 166
            +E+L+DG  YV +S    K
Sbjct: 78  NIEDLQDGKEYVCASNARLK 97


>SB_19020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 87  KARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLELPRGARFIFGMDGDRKY 146
           +A R+T Y+NGDPF  G +      R   + D  LD  +   +     R I    G    
Sbjct: 8   QATRITIYKNGDPFSKGKDIVIN-HRYYRTFDTFLDNATRYAKCSDAVRKIVTPQGRHHI 66

Query: 147 R-LEELEDGASYVVSSYKT 164
           + ++EL+ G  YV   + T
Sbjct: 67  KSVDELQHGGKYVAIGHVT 85


>SB_14170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 699

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 144 RKYRLEELEDGASYVVSSYKTFKYSYRSVVLRRYAIATFVARLHYMDQEYR 194
           R YR    E G +   S YK  + SYR  V R Y +A+  ++  Y  + YR
Sbjct: 27  RSYRQHAREYGLASSKSQYKYTRRSYRQHV-REYGLASSKSQYKYTRRSYR 76



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 144 RKYRLEELEDGASYVVSSYKTFKYSYRSVVLRRYAIATFVARLHYMDQEYR 194
           R YR    E G +   S YK  + SYR  V R Y +A+  ++  Y  + YR
Sbjct: 96  RSYRQHAREYGLASSKSQYKYTRRSYRQHV-REYGLASSKSQYKYTRRSYR 145



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 144 RKYRLEELEDGASYVVSSYKTFKYSYRSVVLRRYAIATFVARLHYMDQEYR 194
           R YR    E G +   S YK  + SYR  V R Y +A+  ++  Y  + YR
Sbjct: 303 RSYRQHAKEYGLASSKSQYKYTRRSYRQHV-REYELASSKSQYKYTRRSYR 352



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 144 RKYRLEELEDGASYVVSSYKTFKYSYRSVVLRRYAIATFVARLHYMDQEYR 194
           R YR    E G +   S YK  + SYR  V R Y +A   ++  Y  + YR
Sbjct: 165 RSYRQHAREYGLASSKSQYKYTRRSYRQHV-REYGLALSKSQYKYTRRSYR 214



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 144 RKYRLEELEDGASYVVSSYKTFKYSYRSVVLRRYAIATFVARLHYMDQEYR 194
           R YR    E G +   S YK  + SYR    R Y +A+  ++  Y  + YR
Sbjct: 73  RSYRQHAREYGLASSKSQYKYTRRSYRQHA-REYGLASSKSQYKYTRRSYR 122



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 144 RKYRLEELEDGASYVVSSYKTFKYSYRSVVLRRYAIATFVARLHYMDQEYR 194
           R YR    E G +   S YK  + SYR    R Y +A+  ++  Y  + YR
Sbjct: 486 RSYRQHVREYGLALSKSQYKYTRRSYRQHA-REYKLASSKSQYKYTKRSYR 535



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 144 RKYRLEELEDGASYVVSSYKTFKYSYRSVVLRRYAIATFVARLHYMDQEYR 194
           R YR    E G +   S YK  + SYR    R Y +A+  ++  Y  + YR
Sbjct: 4   RSYRQHVREYGLASSKSQYKYTRRSYRQHA-REYGLASSKSQYKYTRRSYR 53


>SB_17267| Best HMM Match : WSC (HMM E-Value=2e-12)
          Length = 255

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 78  SRYANLNYWKARRVTFYRNGDP-FHPGVEFRFKPGRDLASIDALLDRLSERLELPRGARF 136
           SR+ N NY+K    +     +  F  GV   +   RD   ++ + DR+ E  EL  G+R 
Sbjct: 58  SRWKNGNYYKGAIESLTNTLNVLFDTGVRRSYNL-RD--EVNVITDRVPEDSELTVGSRV 114

Query: 137 IFGMDGDRKYRLEELED--GASYVVSSYKTFKYSYR 170
           +      R +++  + D  G SY++  Y+   Y Y+
Sbjct: 115 LVNRPRSRAFQIGYIRDIVGGSYLI-WYEDGAYVYQ 149


>SB_16027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 122 DRLSERLELPRGARFIF---GMDGD-RKYRLEELEDGA 155
           +R  E  E PRG RFI    GM G+ R+ R  E+ED +
Sbjct: 88  ERKQEETEKPRGERFIVLKKGMSGNKRRQRNPEVEDSS 125


>SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14)
          Length = 239

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 128 LELPRGARFIFGMDGDRKYRLEELEDGASYVVSSYKTFKYSYR 170
           L+LP G  F  G D D KY + ++  G  +V   ++T    YR
Sbjct: 164 LDLPEGVAFKVGQDSDVKYLVLQVHYG--HVDKFFRTVMTGYR 204


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 111  GRDLASI-DALLD--RLSERLELPRGARFIFGMDGDRKYRLEELEDGASYVVSSYKTFKY 167
            G DL    DA++   R+S  +  PRG   + G+ G  K  L  L    S  ++ YKTF+ 
Sbjct: 2655 GMDLVFFRDAMIHLMRVSRIIRTPRGNALLVGVGGSGKQSLTRL----SSFIAGYKTFQI 2710

Query: 168  SYRSVVLRRYAIATFVARLHYM 189
            +    + R Y  +  +  L Y+
Sbjct: 2711 T----LTRSYNSSNLMEDLKYL 2728


>SB_16373| Best HMM Match : L51_S25_CI-B8 (HMM E-Value=3.6)
          Length = 537

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 101 HPGVEFRFKPGRDLASIDALLDRLSERLELPRGARFIF 138
           +P +E   KP  D  + + LLD L +    PRG R IF
Sbjct: 50  YPALEMDDKPVVDDTASEELLDTLEKDSHAPRGYRPIF 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.141    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,522,599
Number of Sequences: 59808
Number of extensions: 204542
Number of successful extensions: 443
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 18
length of query: 196
length of database: 16,821,457
effective HSP length: 78
effective length of query: 118
effective length of database: 12,156,433
effective search space: 1434459094
effective search space used: 1434459094
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)