Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002784-TA|BGIBMGA002784-PA|IPR003533|Doublecortin
(196 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical pr... 68 5e-12
Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical pr... 68 5e-12
AL110501-9|CAB54507.2| 802|Caenorhabditis elegans Hypothetical ... 58 5e-09
AL033514-40|CAD36501.1| 802|Caenorhabditis elegans Hypothetical... 58 5e-09
AJ319870-1|CAC67459.1| 802|Caenorhabditis elegans ZYG-8 protein... 58 5e-09
Z82076-7|CAB04933.2| 291|Caenorhabditis elegans Hypothetical pr... 49 2e-06
U80441-12|ABE73337.1| 147|Caenorhabditis elegans Hypothetical p... 34 0.058
Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical pr... 28 3.8
AC024882-18|AAF60938.1| 392|Caenorhabditis elegans Hypothetical... 28 5.1
>Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical
protein W07G1.5b protein.
Length = 450
Score = 67.7 bits (158), Expect = 5e-12
Identities = 31/99 (31%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 71 PIRTEPASRYANLNYWKARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLEL 130
P+ + S + ++ + R+++ Y+NGD +H GV+F P R + ++ LL+++++R+EL
Sbjct: 17 PLSSSGVSSLSGISSYNIRKISIYKNGDRYHRGVKFVINP-RVIKDMEPLLNQVNDRIEL 75
Query: 131 PRGARFIFGMDGDRKYRLEELEDGASYVVSSYKTFKYSY 169
GA+ ++ DG ++ELEDG YV +S + Y
Sbjct: 76 SHGAKKLYTTDGKIVNSIKELEDGKIYVAASAQFIPMRY 114
>Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical
protein W07G1.5a protein.
Length = 438
Score = 67.7 bits (158), Expect = 5e-12
Identities = 31/99 (31%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 71 PIRTEPASRYANLNYWKARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLEL 130
P+ + S + ++ + R+++ Y+NGD +H GV+F P R + ++ LL+++++R+EL
Sbjct: 17 PLSSSGVSSLSGISSYNIRKISIYKNGDRYHRGVKFVINP-RVIKDMEPLLNQVNDRIEL 75
Query: 131 PRGARFIFGMDGDRKYRLEELEDGASYVVSSYKTFKYSY 169
GA+ ++ DG ++ELEDG YV +S + Y
Sbjct: 76 SHGAKKLYTTDGKIVNSIKELEDGKIYVAASAQFIPMRY 114
>AL110501-9|CAB54507.2| 802|Caenorhabditis elegans Hypothetical
protein Y79H2A.11 protein.
Length = 802
Score = 57.6 bits (133), Expect = 5e-09
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 66 SEPPRPIRTEPASRYANLNYWKARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLS 125
SE R R P S Y +L KA+R+ FYRNGD + G+++ + R + S+ L++ L
Sbjct: 191 SEMQRRCRIGP-SGYPHL--LKAKRLRFYRNGDQYFKGIQYALQSDR-VKSMQPLMEDLM 246
Query: 126 ERL-----ELPRGARFIFGMDG-DRKYRLEELEDGASYVVSSYKTFK 166
+ + LP G R IF +DG R +++ EDG YV SS FK
Sbjct: 247 KTVICDSTALPHGIRHIFTIDGAQRITSVDQFEDGGGYVCSSTDAFK 293
>AL033514-40|CAD36501.1| 802|Caenorhabditis elegans Hypothetical
protein Y79H2A.11 protein.
Length = 802
Score = 57.6 bits (133), Expect = 5e-09
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 66 SEPPRPIRTEPASRYANLNYWKARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLS 125
SE R R P S Y +L KA+R+ FYRNGD + G+++ + R + S+ L++ L
Sbjct: 191 SEMQRRCRIGP-SGYPHL--LKAKRLRFYRNGDQYFKGIQYALQSDR-VKSMQPLMEDLM 246
Query: 126 ERL-----ELPRGARFIFGMDG-DRKYRLEELEDGASYVVSSYKTFK 166
+ + LP G R IF +DG R +++ EDG YV SS FK
Sbjct: 247 KTVICDSTALPHGIRHIFTIDGAQRITSVDQFEDGGGYVCSSTDAFK 293
>AJ319870-1|CAC67459.1| 802|Caenorhabditis elegans ZYG-8 protein
protein.
Length = 802
Score = 57.6 bits (133), Expect = 5e-09
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 66 SEPPRPIRTEPASRYANLNYWKARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLS 125
SE R R P S Y +L KA+R+ FYRNGD + G+++ + R + S+ L++ L
Sbjct: 191 SEMQRRCRIGP-SGYPHL--LKAKRLRFYRNGDQYFKGIQYALQSDR-VKSMQPLMEDLM 246
Query: 126 ERL-----ELPRGARFIFGMDG-DRKYRLEELEDGASYVVSSYKTFK 166
+ + LP G R IF +DG R +++ EDG YV SS FK
Sbjct: 247 KTVICDSTALPHGIRHIFTIDGAQRITSVDQFEDGGGYVCSSTDAFK 293
>Z82076-7|CAB04933.2| 291|Caenorhabditis elegans Hypothetical
protein W07G1.1 protein.
Length = 291
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 82 NLNYWKARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLELPRGARFIFGMD 141
N N +++ YRN D F G++ R + S+D LLD ++ER+ L GA+ ++
Sbjct: 24 NGNAAGVKKIHVYRNADVFFQGIQMVVNTHR-VPSVDVLLDVITERIGLINGAKKLYTTS 82
Query: 142 GDRKYRLEELEDGASYVVSS 161
G + +++DG +YV SS
Sbjct: 83 GTLVKDINKIKDGQNYVASS 102
>U80441-12|ABE73337.1| 147|Caenorhabditis elegans Hypothetical
protein F27C1.13 protein.
Length = 147
Score = 34.3 bits (75), Expect = 0.058
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 86 WKARRVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLELPRGARFIFGMDGDRK 145
+ A+ +T Y+ D F+ G R ++D L+D L+ + LP G R I G
Sbjct: 41 YSAKNITIYKENDTFYTGHRVPVSNHR-YKTLDVLMDDLNRTMYLPYGVRTITTPMGRTI 99
Query: 146 Y-RLEELEDGASYVVSSYKTFKYSYR 170
L++ + YV SS K S R
Sbjct: 100 ITSLDQFQHLGKYVASSSNPPKASLR 125
>Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical
protein C06C3.3 protein.
Length = 576
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 90 RVTFYRNGDPFHPGVEFRFKPGRDLASIDALLDRLSERLELPRGARFIFGMDGDRKYRLE 149
R+ +RNGD F G + LD L++ L R +F G + +
Sbjct: 18 RIRVFRNGDMFDHG-RILVVTRKQFKHWIVFLDALTDLLRTATAVRRLFTTQGIPVHHFD 76
Query: 150 ELEDGASYV 158
+LE YV
Sbjct: 77 DLETNGEYV 85
>AC024882-18|AAF60938.1| 392|Caenorhabditis elegans Hypothetical
protein Y9C9A.16 protein.
Length = 392
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 140 MDGDRKYRLEELEDGASYVVSSYKTFKYSYRSVVLR 175
+D +RK ++ + GA+++ +TF S +VVLR
Sbjct: 92 LDSNRKKQVNLIPKGATWIQDKVETFNPSQNTVVLR 127
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.141 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,948,919
Number of Sequences: 27539
Number of extensions: 156073
Number of successful extensions: 316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 9
length of query: 196
length of database: 12,573,161
effective HSP length: 78
effective length of query: 118
effective length of database: 10,425,119
effective search space: 1230164042
effective search space used: 1230164042
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)
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