GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002783-TA|BGIBMGA002783-PA|IPR001678|Bacterial Fmu
(Sun)/eukaryotic nucleolar NOL1/Nop2p
         (663 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   3.8  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    24   3.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   6.7  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 159 RCTSGSYEDYLKQIQNLSEDDFTQDYHVKTIFVFP 193
           +  +G Y+++L Q++ +  +       ++TIF  P
Sbjct: 207 KLNNGHYKNFLSQVEIIHNEILVTHNEIQTIFSVP 241


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 159 RCTSGSYEDYLKQIQNLSEDDFTQDYHVKTIFVFP 193
           +  +G Y+++L Q++ +  +       ++TIF  P
Sbjct: 32  KLNNGHYKNFLSQVEIIHNEILVTHNEIQTIFSVP 66


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 623 NGNAKRQSKKRSNNNDFNEIAEKTENIES 651
           NGN K+ S    ++++ N  ++ T N+ S
Sbjct: 398 NGNGKKGSSDSCSDSEENSQSDITNNVNS 426


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,217
Number of Sequences: 317
Number of extensions: 5735
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 663
length of database: 114,650
effective HSP length: 61
effective length of query: 602
effective length of database: 95,313
effective search space: 57378426
effective search space used: 57378426
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)