Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002783-TA|BGIBMGA002783-PA|IPR001678|Bacterial Fmu
(Sun)/eukaryotic nucleolar NOL1/Nop2p
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 158 2e-39
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 67 8e-12
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 58 4e-09
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 52 3e-07
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 32 0.22
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 31 0.68
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 2.7
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 2.7
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 28 3.6
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 28 4.8
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 4.8
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 158 bits (384), Expect = 2e-39
Identities = 143/466 (30%), Positives = 222/466 (47%), Gaps = 73/466 (15%)
Query: 12 YKIAANILKKVSTEGGSVKTLLYDDKLRHFRTNVLFALITETIKHSDVITKIFESCDILQ 71
Y AANIL +S + GS+K L ++ K +H +AL+ ET+K+ V+ +I D
Sbjct: 4 YNHAANILSDLSKKKGSIKQLAFNSK-KHDPKRT-YALVCETLKYKPVLDEIIARSDCFL 61
Query: 72 NETRLDPWLAKILTAELLYGKKVLPGKSKP-EQTISSYKENF---------EKYLSEHQD 121
E LA++L +LL K+ L + P ++ I +K +K + H++
Sbjct: 62 KEN-----LARVLVHDLLMSKRGLSISNGPIKECILRHKTRLNAEFVKLKVKKGVKSHEE 116
Query: 122 DSQIQDVPKPRYVRINTNLLTTSDAIRAFQDEGYHFVRCTSGSYEDYLKQIQNLSEDDFT 181
+ V PR++RINT I++ +DE G D + I+ L D F
Sbjct: 117 LALKNPVSLPRWLRINT--------IKSTKDE------VLQGLGLDKVSSIEELGPDKFY 162
Query: 182 QDYHVKTIFVFPPGTKLHDHELYFESKIILQNKATAMAVHLLAPPSGSI--VLDMCAAPG 239
D V+ + P + ++ LY E K+I+Q+KA+ +LA +G + ++D CAAPG
Sbjct: 163 IDDCVENLIAIDPSFPIVENSLYKEGKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPG 222
Query: 240 MKTTQTAAYMRNNVGSNSDKRLFSKGHPRNLIDMGKIYAIERNEKRFETLRDFVNKTGSH 299
KTT AA F K H I+A ER+ KR +TLR V +G++
Sbjct: 223 NKTTHLAA-------------CFPKSH---------IFAFERDAKRVQTLRKMVGISGAN 260
Query: 300 CVEPIHRD--CLEIKKGEFDDVEYILLDPSCSGSGMDISVHNYI---------EESRLAK 348
V H+D + K + +V +ILLDPSCSGSG+ +S +Y+ + RL
Sbjct: 261 NVTIEHQDFTLTDPKSDLYRNVTHILLDPSCSGSGI-VSRQDYLLGNEQDVTEDTERLEN 319
Query: 349 LTSLQEKFLKHAMNAFPRAKRIVYSTCSLFPEENERVITNVVKTSRTKWRVQDVKELLKG 408
L S Q LKHA+ FP + + YSTCS+ ENE+V+ V+ + W+ + + L
Sbjct: 320 LCSFQSTILKHALQ-FPNCRHVTYSTCSVHRLENEQVVCEVL-SQEPDWKCNSLTKTLP- 376
Query: 409 QWKNFGSAMY---GSMGTRCMYARQDSDLTTGFFLAVLDRDPKDLE 451
WK G Y SM + + + T GFF+A L ++ E
Sbjct: 377 NWKTRGIPEYCAQPSMAEGMIRCKPGAGGTIGFFVANLYHPQREQE 422
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 66.9 bits (156), Expect = 8e-12
Identities = 57/189 (30%), Positives = 79/189 (41%), Gaps = 6/189 (3%)
Query: 222 LLAPPSGSIVLDMCAAPGMKTTQTAAYMRNNVGSNSDKRLFSKGHP-RNLIDMGKIYAIE 280
LL S VLDMCAAPG KT Q + L G N D + + +
Sbjct: 138 LLNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPSGIVIANDSDNKRAHMLV 197
Query: 281 RNEKRFETLRDFVNKTGSHCVEPIHRDCLEIKKGEFDDVEYILLDPSCSGSGM---DISV 337
KR + + + + H + KK F + IL D CSG G +I++
Sbjct: 198 HQIKRLNSPNVLIVNHDASFLPNFHLSSPDGKK--FLKFDRILADVPCSGDGTFRKNIAL 255
Query: 338 HNYIEESRLAKLTSLQEKFLKHAMNAFPRAKRIVYSTCSLFPEENERVITNVVKTSRTKW 397
N L + Q K L + + R+VYSTCSL P ENE V++ V+ +R
Sbjct: 256 WNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIENEAVVSAVLNATRGSV 315
Query: 398 RVQDVKELL 406
R+ DV L
Sbjct: 316 RLVDVSSEL 324
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 58.0 bits (134), Expect = 4e-09
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 28/195 (14%)
Query: 204 YFESKIILQNKATAMAVHLLAPPSGSIVLDMCAAPGMKTTQTAAYMRNNVGSNSDKRLFS 263
Y ILQ ++ + V LAP +LDM +APG K T AA +N
Sbjct: 316 YLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNT----------- 364
Query: 264 KGHPRNLIDMGKIYAIERNEKRFETLRDFVNKTGSHCVEPIHRDCLEIKKGEFDDVEYIL 323
G I+A + N+ R + L +++ G + D + + +L
Sbjct: 365 ----------GIIFANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPNEVIGGFDRVL 414
Query: 324 LDPSCSGSGM---DISVHNYIEESRLAKLTSLQEKFLKHAMNAFPRAKR----IVYSTCS 376
LD CSG+G+ D SV E L+ LQ + L A+++ + IVYSTCS
Sbjct: 415 LDAPCSGTGVIYKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCS 474
Query: 377 LFPEENERVITNVVK 391
+ +E+E VI +K
Sbjct: 475 ITVDEDEAVIQYALK 489
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 52.0 bits (119), Expect = 3e-07
Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 30/200 (15%)
Query: 230 IVLDMCAAPGMKTTQT--AAYMRNNVGSNSDKRLFSKGHPRNLIDM-GKIYAIERNEKRF 286
++LDMCAAPG KT Q A Y + N+ D SK NL + G + A + + KR
Sbjct: 162 VILDMCAAPGSKTAQLIEAVYKKANI---KDAAHDSK----NLKSVEGLVIANDADPKRA 214
Query: 287 ETLRDFVNKTGSHCVEPIHRDC-----LEIKKGEFDD------------VEYILLDPSCS 329
+ L +N+ S + ++ D + +K D + IL D CS
Sbjct: 215 QMLVHQINRLNSPNILVVNHDASTMPNIYVKGSSPSDGLNVIEEKKILKFDRILADVPCS 274
Query: 330 GSGM---DISVHNYIEESRLAKLTSLQEKFLKHAMNAFPRAKRIVYSTCSLFPEENERVI 386
G G ++S+ + L LQ + L + +VYSTCS+ P ENE V+
Sbjct: 275 GDGTFRKNLSLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIENEAVV 334
Query: 387 TNVVKTSRTKWRVQDVKELL 406
T +K + + DV + L
Sbjct: 335 TAALKATGGAVSLVDVSKKL 354
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 32.3 bits (70), Expect = 0.22
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 74 TRLDPWLAKILTAELLYGKKVLPGKSKPEQTI 105
T++D W A + AEL G+ + PG S EQ +
Sbjct: 205 TKIDVWSAACVIAELFIGRPLFPGDSSVEQLV 236
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 30.7 bits (66), Expect = 0.68
Identities = 20/76 (26%), Positives = 27/76 (35%)
Query: 577 NKVDDTAKCENTEKDKLIVDADLEEPVXXXXXXXXXRDETEEYNVENGNAKRQSKKRSNN 636
N + AK EK VD+ E P +E E NV N + K N
Sbjct: 44 NDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEEN 103
Query: 637 NDFNEIAEKTENIESD 652
+ + E+ E E D
Sbjct: 104 EEEADANEEEEEDEED 119
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 571 NKMLNKNKVDDTAKCENTEKDKLIVDADLEEPVXXXXXXXXXRDETEEYNVENGNAKRQS 630
N++ N N D +N E+++ DA+ EE +E EE E+G +R+
Sbjct: 83 NEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDD-----EEDEEDEDESGGGRRKR 137
Query: 631 KKRSNNNDFNEIAEKTENIESD 652
+ N F +I + + E +
Sbjct: 138 ARHDRRNQFLDIEAEVDEDEEE 159
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 2.7
Identities = 23/172 (13%), Positives = 52/172 (30%)
Query: 475 SKADYEQDRDVNELDTQVDSVQKRKKKKERSDETHSTIIDSEGNNLIVDTMSEDNALRVX 534
S +D E + D+ S + +++ S+ DSE + D+ S ++
Sbjct: 203 SSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSE 262
Query: 535 XXXXXXXXXXXXXXXDTEYDSXXXXXXXXXXXXXKHNKMLNKNKVDDTAKCENTEKDKLI 594
D+E DS + + + + D++
Sbjct: 263 SESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTD 322
Query: 595 VDADLEEPVXXXXXXXXXRDETEEYNVENGNAKRQSKKRSNNNDFNEIAEKT 646
E + T + ++ +S KR + +D + + K+
Sbjct: 323 TTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDKSLKRKHEDDESSTSTKS 374
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 165 YEDYLKQIQNLSEDDFTQDYHVKTIFVFPPGTKLHDHELYFESKIILQNKATAMAVHLLA 224
Y+ Q NL + + + K + +F T + + ++FESK+ +NK A+ +L
Sbjct: 780 YQATTLQFYNLPK---VRPFFEKGVTLFSANTAIWEVYIFFESKLRQENKPKIRAMKILK 836
Query: 225 PPSGSIV 231
S ++V
Sbjct: 837 SASNAVV 843
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 59 VITKIFESCDILQNETR----LDPWLAKILTAELLYGKKVLPGKSKPEQ 103
V+T+ + S ++L E R +D W + AE+ G+ +L G S +Q
Sbjct: 215 VVTRWYRSPELLLGERRYTTAIDMWSVGCIMAEMYKGRPILQGSSDLDQ 263
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 478 DYEQDRDVNELDTQVDSVQKRKKKKERSDETHSTIIDSEGNN 519
+YE+D +E QVD + ++++E D T ++ S+ N+
Sbjct: 63 NYEEDIIDDEESAQVDEEELEEEEEEEEDATPEPVVTSKKNS 104
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 4.8
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 307 DCLE-IKKGEFDDVEYILLDPSCSGSGMDISVHNYIEESRLAKLTSLQEKFLKHAMNAFP 365
DC E I FDD + +L G ++VHN + ++ +S+ E L HA+
Sbjct: 1307 DCNEVISDVHFDDFIWEVLRLVLPG----VTVHNLGTQGTVSVTSSVIETILPHALRRIG 1362
Query: 366 RAKRIVYSTCSLFPEENERVITNVVKTSRTKWRVQDVKELLKG 408
K + F E VI ++K + + + ++E L G
Sbjct: 1363 ALKPEELGKSTYFMEGIHDVIVGLLKGIQCQQSDESIRENLYG 1405
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.131 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,041
Number of Sequences: 5004
Number of extensions: 121630
Number of successful extensions: 382
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 20
length of query: 663
length of database: 2,362,478
effective HSP length: 77
effective length of query: 586
effective length of database: 1,977,170
effective search space: 1158621620
effective search space used: 1158621620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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