GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002783-TA|BGIBMGA002783-PA|IPR001678|Bacterial Fmu
(Sun)/eukaryotic nucleolar NOL1/Nop2p
         (663 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    32   0.042
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   4.9  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    25   4.9  
DQ182017-1|ABA56309.1|  383|Anopheles gambiae G(alpha)s protein.       25   6.4  
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          25   8.5  

>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 32.3 bits (70), Expect = 0.042
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 48  ALITETIKHSDVITKIFESCDILQNETRLDPWLAKILTAELLYGKKV-LPGKSKPEQTIS 106
           AL     KH+D+  K+F+ C  L NE   D W  + L      GK   L    +P   ++
Sbjct: 446 ALTAAIRKHTDIFKKLFQEC--LDNERFPDEWKKQKLALIPKPGKPPGLASSFRPILLLN 503

Query: 107 SYKENFEKYLSEHQDDSQIQDVPKPRYVRINTNL---LTTSDAIRAFQDEGYH 156
           +  + +E+ L    +D  I+D   PR            +T  AI+   D G H
Sbjct: 504 NPGKVYERLLLSRIND-VIEDPESPRLAENQYGFRRGRSTVQAIQLVVDAGSH 555


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 17/57 (29%), Positives = 24/57 (42%)

Query: 138  TNLLTTSDAIRAFQDEGYHFVRCTSGSYEDYLKQIQNLSEDDFTQDYHVKTIFVFPP 194
            T LLT   A      EGY +     G+     K++Q L   D+T D   K  + + P
Sbjct: 1757 TQLLTGKVAELNPSCEGYPYTHTIYGNDPTENKRLQGLPGKDYTVDGKYKRSYSYEP 1813


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 102  EQTISSYKENFEKYLSEHQDDSQIQDVPK 130
            E+TISS+KEN   +L E +++    +VP+
Sbjct: 1573 EETISSFKENI--FLKEDENNFMRGEVPR 1599


>DQ182017-1|ABA56309.1|  383|Anopheles gambiae G(alpha)s protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 169 LKQIQNLSEDDFTQDYHVKTIFVFPPGTKLHDHELY 204
           L++ +N +  D+ QDY     F +PP    H  EL+
Sbjct: 108 LEKPENQARVDYIQDYASGPDFNYPPEFYEHTEELW 143


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 103  QTISSYKENFEKYLSEHQ-DDSQIQDVPKP 131
            QTI + +E+F  Y SE + D+S +   P+P
Sbjct: 1082 QTIGAREESFSSYRSETEPDNSPMGGSPRP 1111


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,050
Number of Sequences: 2123
Number of extensions: 24160
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 6
length of query: 663
length of database: 516,269
effective HSP length: 68
effective length of query: 595
effective length of database: 371,905
effective search space: 221283475
effective search space used: 221283475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)