GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002782-TA|BGIBMGA002782-PA|IPR001611|Leucine-rich repeat
         (358 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    34   0.002
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    22   7.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 111 ELPHLLLIHADKNILRS---GALKKMKYLQVIIMNYNELTTV-HDVFQ--PELSTLEVGY 164
           +L  L  IH D N + S    A   +K L+ + +  N++ T+ ++ FQ  PEL  L++ Y
Sbjct: 114 DLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAY 173

Query: 165 NKIRKINFD 173
           N I  ++F+
Sbjct: 174 NSISSLDFN 182



 Score = 31.5 bits (68), Expect = 0.010
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 15/168 (8%)

Query: 84  AIKYFKHLQFVDVSNNKLDLEALQAVTELPHLLLIHADKN---ILRSGALKK--MKYLQV 138
           AIK    L+ +D+SNN+L      +   L  L  +H   N   ++  G  +    + L  
Sbjct: 37  AIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQGDIHRDLTE 96

Query: 139 IIMNYNELTTVHDVFQPELSTLE---VGYNKIRKINFDS--RMETIRCLDFRYNLIEDI- 192
           +  ++N +  V      +L  LE   +  N+I  +   +   +++++ L+ + N I  I 
Sbjct: 97  VYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIA 156

Query: 193 --NGLNFPNLDSLYLAGNQINSLIG--LESCVNLRILHVRNNPIKLLN 236
                N P L+ L LA N I+SL     +   +L + HV  +  KL+N
Sbjct: 157 YETFQNLPELEDLDLAYNSISSLDFNIFDQVGSLGMFHVNMSHNKLIN 204



 Score = 30.3 bits (65), Expect = 0.022
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 132 KMKYLQVIIMNYNELTTVHDVF--QPELSTLEVGYNKIRKINFDSRMET--IRCLDFRYN 187
           ++  +Q+ + +   L    D+F   P L  L++ +N + +++FD+   T  ++ LD  +N
Sbjct: 247 ELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSHN 306

Query: 188 LIEDINGLNFPNLDSLYLAGNQINSLIGL 216
            I +I    F  L +L +     N L  L
Sbjct: 307 RISEIPNDLFRFLGNLRIVDFSHNRLRSL 335



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 76  DMNLTDITAIKYFKH----LQFVDVSNNKL----DLEALQAVTELPHLLLIHADKNILRS 127
           +++  D++A+    H    L+ + +  N +    +   L A  +L  L L + D  +L S
Sbjct: 496 NLDYNDLSAVPIVTHSLTELRHLSLEGNPITTLSNTSLLGAANQLEELNLKNIDLTVLES 555

Query: 128 GALKKMKYLQVI 139
           GA  KM+ L+ +
Sbjct: 556 GAFCKMQPLRTL 567


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 292 ADEEENSELRVEILAALPKLKKINKTVVTPE 322
           AD++   +LR E+  A   L  ++KT +T E
Sbjct: 82  ADKKALQKLRREVEKAKRDLSSVHKTTLTIE 112


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,637
Number of Sequences: 317
Number of extensions: 2585
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 358
length of database: 114,650
effective HSP length: 58
effective length of query: 300
effective length of database: 96,264
effective search space: 28879200
effective search space used: 28879200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)