Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002782-TA|BGIBMGA002782-PA|IPR001611|Leucine-rich repeat
(358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 59 8e-10
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 46 6e-06
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 44 3e-05
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 34 0.027
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 29 1.3
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.1
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 27 3.1
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 27 4.1
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 4.1
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 4.1
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 27 4.1
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 4.1
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 27 5.4
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 7.1
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 26 9.4
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 26 9.4
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 26 9.4
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 9.4
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 59.3 bits (137), Expect = 8e-10
Identities = 66/257 (25%), Positives = 122/257 (47%), Gaps = 25/257 (9%)
Query: 73 TCTDMNLTD-----ITAIKYFKHLQFVDVSNNKLDLEALQAVTELPHLL-LIHADKNILR 126
T T+++L D I + K+L ++D+S N +++ ++ + L L L I R
Sbjct: 83 TLTELDLYDNLIVRIENLDNVKNLTYLDLSFN--NIKTIRNINHLKGLENLFFVQNRIRR 140
Query: 127 SGALKKMKYLQVIIMNYNELTTVHDVFQ-PELSTLEVGYNKIRKINFDSRMETIRCLDFR 185
L+ + L + + N++ + ++ L L VG NKI K +++ + L +
Sbjct: 141 IENLEGLDRLTNLELGGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEKLQKLSLLSIQ 200
Query: 186 YNLIEDINGLNFPN--LDSLYLAGNQINSLIGLESCVNLRILHVRNNPIKLLNGFVPDLG 243
N I L + L LY++ N + S G+E NL IL V NN IK L+ ++ L
Sbjct: 201 SNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLS-YLAGLK 259
Query: 244 RLQYVNLRNCKVSTLRQVK-KLKVLPSLETLILKGCPYMGGTGEETPEVADEEENSELRV 302
L + N ++S+ ++++ +L L LET+ +G P + P V R
Sbjct: 260 NLVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQ----KTNPAV--------YRN 307
Query: 303 EILAALPKLKKINKTVV 319
++ LP+L++I+ T++
Sbjct: 308 KVRLCLPQLRQIDATII 324
Score = 29.1 bits (62), Expect = 1.0
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 179 IRCLDFRYNLIEDINGLNFPNLDSLYLAGNQINSL--IGLESCVNLRILHVRNNPIKLLN 236
++ +D +L++D+ ++D + L ++I S+ +GLE NL+ L +R N IK +
Sbjct: 23 VQQIDADEDLLDDVPD----DVDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIE 78
Query: 237 GFVPDLGRLQYVNLRNCKVSTLRQVKKLKVL 267
L L + ++ L VK L L
Sbjct: 79 SVPETLTELDLYDNLIVRIENLDNVKNLTYL 109
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 46.4 bits (105), Expect = 6e-06
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Query: 42 PVRKLNRSEVSVRLGLLGKTAEADGYTYLKATCTDMNLTDITAIKYFKHLQFVDVSNNKL 101
PV + + V RL L + YL + L D+T + HL+ + V +N L
Sbjct: 645 PVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQ--LEDLTGLSSLIHLRELKVDSNHL 702
Query: 102 DLEALQAVTELPHLLLIHADKNILR--SGALKKMKYLQVIIMNYNELTTVHDVFQPE-LS 158
+L + L LL + A N ++ S + L+ +++ NE+ + ++ + L
Sbjct: 703 --WSLDGIQHLDGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLM 760
Query: 159 TLEVGYNKIRKINFDSRMETIRCLDFRYNLIEDINGLNFPNLDSLYLAGNQIN 211
L++ NK+ + M +R L N I + FP+L +LY+ N+ N
Sbjct: 761 VLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLNRFN 813
Score = 45.6 bits (103), Expect = 1e-05
Identities = 38/173 (21%), Positives = 87/173 (50%), Gaps = 4/173 (2%)
Query: 102 DLEALQAVTELPHLLLIHADKNILRS-GALKKMKYLQVIIMNYNELTTVHDVFQPELSTL 160
++E ++ ++ L +L+++ D N L + A + M +L+++ ++ N + + P L TL
Sbjct: 746 EIEEIEEISSLQNLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTL 805
Query: 161 EVGYNKIRKINFDSRMETIRCLDFRYNLIEDINGLNFPNLD--SLYLAGNQINSLIGLES 218
+ N+ + R++ + FR E N + P+LD +LYL+ N +L
Sbjct: 806 YMDLNRFNRPPDIRRLKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTLDCKHM 865
Query: 219 CVNLRILHVRNNPIKLLNGFV-PDLGRLQYVNLRNCKVSTLRQVKKLKVLPSL 270
+ +R L + N +K + ++ + L+ ++L + +S + +K L+++ L
Sbjct: 866 FLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDIESLKPLQMIHRL 918
Score = 35.1 bits (77), Expect = 0.015
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 130 LKKMKYLQVIIMNYNELTTVHDVFQPELSTLEVGYNKIRKINFDSRMETIRCLDFRYNLI 189
L ++YL + +LT + + L L+V N + ++ ++ + L N I
Sbjct: 667 LLNLQYLDISYNQLEDLTGLSSLIH--LRELKVDSNHLWSLDGIQHLDGLLKLSACNNRI 724
Query: 190 EDIN--GLNFPNLDSLYLAGNQINSLIGLESCVNLRILHVRNNPIKLLNGFVPDLGRLQY 247
++++ N L+ L L N+I + + S NL +L + NN + L P + L+
Sbjct: 725 KELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKASQPMI-HLRI 783
Query: 248 VNLRNCKVSTLRQVKKLKVLPSLETLIL 275
+ + N + L ++ P L TL +
Sbjct: 784 LRISNNAIHQL----EVDQFPHLRTLYM 807
Score = 34.3 bits (75), Expect = 0.027
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 178 TIRCLDFRYNLIEDINGL-NFPNLDSLYLAGNQINSLIGLESCVNLRILHVRNNPIKLLN 236
TIR L+ N + + N NL L ++ NQ+ L GL S ++LR L V +N + L+
Sbjct: 647 TIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLD 706
Query: 237 G 237
G
Sbjct: 707 G 707
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 44.0 bits (99), Expect = 3e-05
Identities = 46/211 (21%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Query: 68 TYLKATCTDMNLTDITAIKYFKHLQFVDVSNNKLDL--EALQAVTELPHLLLIHADKNIL 125
TYL + + +T I L+ ++ S+N L + ++ +L HL L D +
Sbjct: 528 TYLDLSYNNF-VTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNR 586
Query: 126 RSGALKKMKYLQVIIMNYNELTTVHDVFQ-PELSTLEVGYNKIRKINFDSRMETIRCLDF 184
+ +K L+ I ++YN +T + + + P+L+++ V N + + + T +DF
Sbjct: 587 LPQEIGLLKNLETIDLSYNAITNIASLSECPKLNSINVACNLLSFYEYSNPSATF--IDF 644
Query: 185 RYNLIEDIN-GLNFPNLDSLYLAGNQINSLIG--LESCVNLRILHVRNNPIKLLNGFVPD 241
+ + I+ ++ NL ++ ++ L +E+ VN+ + V N ++ +
Sbjct: 645 SFCPLTTIDPAFSYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNHFTSISDAISA 704
Query: 242 LGRLQYVNLRNCKVSTLR-QVKKLKVLPSLE 271
+ L+Y++ NC++S + + KLK L L+
Sbjct: 705 MQNLKYLSCTNCEMSYVSPNLGKLKHLVHLD 735
Score = 34.3 bits (75), Expect = 0.027
Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 28/230 (12%)
Query: 73 TCTDMNLTDITA-IKYFKHLQFVDVSNNKLDLEALQAVTELPHLLLIHADKNILR----- 126
+CT+ ++ ++ + KHL +D+ N + + + V ++ L +++ NIL
Sbjct: 712 SCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFP-EEVWQVSSLKVVNLSSNILEKIKLP 770
Query: 127 -------SGALKKMKYLQVIIMNYNELTTVHDVFQPELSTLEVGYNKIRKINFDSRMETI 179
+ + ++K ++ + N + + P + L + N++ F + +E
Sbjct: 771 VATSKKLTRTISQLKIMRTLSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDCFTA-LEYF 829
Query: 180 RCL---DFRYNLIEDINGL---NFPNLDSLYLAGNQINSL-IGLESCVNLRILHVRNNPI 232
+CL + YN + +I NF +L L+++GN++ +L I + V L L+ N +
Sbjct: 830 KCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANLSISSTAQVLLETLYANGNRL 889
Query: 233 KLLNGFVPDLGRLQYV-----NLRNCKVSTLRQVKKLKVLPSLETLILKG 277
L+++ NL+N V + K L LP LE L L G
Sbjct: 890 SSFPKNEALSKSLRFLDISTNNLQNLAVEKAEK-KSLTKLPQLEYLNLSG 938
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 34.3 bits (75), Expect = 0.027
Identities = 12/42 (28%), Positives = 28/42 (66%)
Query: 109 VTELPHLLLIHADKNILRSGALKKMKYLQVIIMNYNELTTVH 150
+T+LP LL+ +D N+ G +K ++L++I ++ ++++H
Sbjct: 873 ITKLPLLLIFWSDSNLDMQGITQKYRFLELITSTWSAISSIH 914
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 195 LNFPNLDSLYLAGNQINSLIGLESCVNLRILHVRNNPI 232
++ +L L L+ N + SL GLE+ +L L +R+N I
Sbjct: 400 ISLSHLQILVLSRNHLTSLSGLENVPSLEKLDIRDNSI 437
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 108 AVTELPHLLLIHADKNILRSGALKKMKYLQVIIMNYNELTT-VHDVFQP 155
AV L ++L+ D + L G +++ +L +++ NY +TT V + F P
Sbjct: 153 AVLALKLVVLLFKDHSSLAKGHVQE--FLSIVVENYKSMTTVVSEAFPP 199
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 3.1
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 195 LNFPNLDSLYLAGNQINSLIGLESCVNLRILHVRNNPIKLLNGFVPDLGRLQYVN---LR 251
+NF N+ SL N + + ++C NL+ L++ N + G V + R Y+N +
Sbjct: 125 INFSNIFSL--PANILEYIS--DNCPNLKALNIGNCGLVEDTGMVQIIKRCPYLNRLIIP 180
Query: 252 NCKVSTLRQVKKLKVLPSLETLILKGC 278
NC+ T ++ L L L + GC
Sbjct: 181 NCRKLTDVSLQILSEKEDLIELDISGC 207
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 131 KKMKYLQVIIMNYNELTTVHDVFQPELSTLEVGYNKIRKINFDSRMETIRCLDFRYNLIE 190
+++K LQ + N ++ + V PE T + + + I+F + T+ D RY E
Sbjct: 84 REIKILQNLAGGPNIISLLDIVRDPESKTPSLIFEFVDNIDFRTLYPTLSDYDIRYYSYE 143
Query: 191 DINGLNF 197
+ L+F
Sbjct: 144 LLKALDF 150
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 216 LESCVNLRILHVRNNPIKLLNGFVP-DLGRLQYVNLRNCKVSTLRQVKK 263
LE C LR + V N +K GF+P DL ++ + L T ++ K
Sbjct: 918 LEDCYPLREVTVSNKKVKEYTGFMPVDLQQMVSIRLHRFNSLTPIEIAK 966
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 4.1
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 168 RKINFDS-RMETIRCLDFRYNLIEDINGLNFPN-----LDSLYLAGNQINSL 213
RKI+ + M+ + CL + +NL D N LN + L SL+L+ +I SL
Sbjct: 381 RKIDVEGLNMQLLLCLKWPFNLFMDKNALNVYSDLWILLGSLHLSITKIKSL 432
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 4.1
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 168 RKINFDSRMETIRCLDFRYNLIEDINGLNFPNLDSLYLAGNQINSLIGLESCVNLRILHV 227
R I S+ + DF + L ++ N P +D+ L NQI ++ CV ++ L
Sbjct: 390 RIIEMTSKSTYMNIADFEWLLTVYVDLANIPGIDTGTLLNNQI-----IDLCVRVKAL-- 442
Query: 228 RNNPIKLLNGFVPDLGRLQYVNLRNCKVSTLRQVKKLKVLPSL 270
R + + + + D YV+ +C VS K+ +LP++
Sbjct: 443 RPFSVDIFSQAILD---PSYVSTTDCSVSE----KRTDILPAI 478
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 304 ILAALPKLKKINKTVVTPEERAEAKELITQWI 335
++A +P L K+N ++P ER +A+ T I
Sbjct: 338 VIARIPSLVKLNDVNISPNERLDAELYYTSCI 369
Score = 26.6 bits (56), Expect = 5.4
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 197 FPNLDSLYLAGNQI--NSLIGLESCVNLRILHVRNN-PIKLLNGFVPDLGRLQYVNLRNC 253
FP+L+ LYL N+I + ++ L+ L + NN + +G+ D+ Q +N N
Sbjct: 216 FPSLEVLYLEANEIILSKATSFKNLQFLQTLSLANNLNLYSADGYAVDV--FQGINNLNL 273
Query: 254 KVSTLRQVKKLKV 266
++L V +L V
Sbjct: 274 SSTSLADVAELPV 286
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 89 KHLQFVDVSNNKLDLEALQAVTELPHLLLIHADKNILR--SGA--LKKMKYLQV 138
KH++F++V+ N D + +LP +++ + ++ SG L K+K+L +
Sbjct: 117 KHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVI 170
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 7.1
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 108 AVTELPHLLLIHADKNILRSGALKKMKYLQVIIMNYNELTT----VHDVFQPELSTLEVG 163
AV+ ++L H+D+N+L K+ + + +Y +T V +F P L TL +G
Sbjct: 12 AVSSYAEIILAHSDENLLSRTKNNLSKWNENRLYDYGSKSTMSLPVSSLF-PALQTLWIG 70
Query: 164 Y--NKIRKINFDSRMETIRCLDFRYNLIEDINGLNFPNLDSLYLAGNQINSLI 214
+ +F SRME + ++ ++ G++ DS + QI+SLI
Sbjct: 71 VVADCSYVTHFTSRMEA------KKHIFQEFEGVSTLYEDSFNI-NVQIHSLI 116
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 9.4
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 214 IGLESCVNLRILH--VRNNPIKLLNGFVP---DLGRLQYVNLRNCKVSTLRQ 260
+G++ C++L +H PI+ + G + + G+++Y+ L C +T+R+
Sbjct: 115 LGID-CIDLYYVHRFSGETPIEKIMGALKKCVEAGKIRYIGLSECSANTIRR 165
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 9.4
Identities = 21/88 (23%), Positives = 37/88 (42%)
Query: 190 EDINGLNFPNLDSLYLAGNQINSLIGLESCVNLRILHVRNNPIKLLNGFVPDLGRLQYVN 249
++++GL N L + +++SL+G S + N I L G D +QY
Sbjct: 53 DEVSGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEF 112
Query: 250 LRNCKVSTLRQVKKLKVLPSLETLILKG 277
+ + KK + + S I+KG
Sbjct: 113 RQKMLDLETKYEKKYQPIFSRRAEIIKG 140
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 25.8 bits (54), Expect = 9.4
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 85 IKYFKHLQFVDVSNNK----LDLEALQAVTELPHLLLIHADKNILRSGALKKMKYLQVII 140
I F++L FV + + K DL ++ + + +I AD NILR G + +KY+Q +
Sbjct: 171 IPSFEYLDFVFIDHWKDLYVPDLRVMETLDLIGQGSIIAAD-NILRPGVPEYVKYVQGSL 229
Query: 141 MNYNEL-TTVHDVFQPE 156
E +TV +V P+
Sbjct: 230 DYRKEYDSTVSNVNGPQ 246
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 9.4
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 47 NRSEVSVRLGLLGKTAEADGYTYLKATCTDMNLTDITAIKYFKHLQFVDVSNNKLDLEAL 106
NR+ +++G G T EA ++N+ IT + + V + +L E L
Sbjct: 321 NRTVEEMKIGDFGNTEEAKDVCVSDEDIHNVNIKQITTL--IGKMSQVQIECKRLRKENL 378
Query: 107 QAVTELPHLLLIHADKNILRSGALK---KMKYLQVIIMNYNE 145
+E HLL + L + A + K++ L II + NE
Sbjct: 379 FLQSERTHLLRELEELRHLATSAKEDFVKVEKLNKIIKDENE 420
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.137 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,278
Number of Sequences: 5004
Number of extensions: 56751
Number of successful extensions: 182
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 27
length of query: 358
length of database: 2,362,478
effective HSP length: 74
effective length of query: 284
effective length of database: 1,992,182
effective search space: 565779688
effective search space used: 565779688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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