GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002782-TA|BGIBMGA002782-PA|IPR001611|Leucine-rich repeat
         (358 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    33   0.003
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              24   2.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 33.5 bits (73), Expect = 0.003
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 199 NLDSLYLAGNQINSLIG--LESCVNLRILHVRNNPIKLLNGF-VPDLGRLQYVNLRNCKV 255
           N+  LY+ G+ I S+         NL+ILH+ +N I+ L GF    L  L+ + L+N  +
Sbjct: 819 NMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLI 878

Query: 256 STLRQVKKLKVLPSLETLILKG 277
             +  +  L  L SLE L L G
Sbjct: 879 GFIGNLTFLP-LRSLEILRLSG 899



 Score = 26.2 bits (55), Expect = 0.44
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 17/161 (10%)

Query: 89  KHLQFVDVSNNKLDLEALQAVTELPHLLLIHADKNILRS---GALKKMKYLQVIIMNYNE 145
           + LQ + +  N +   A  A+T L  L   +A  N L S   G     + L+ I + YN 
Sbjct: 237 RQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNG 296

Query: 146 L--------TTVHDVFQPELSTLEVGYNKIRKINFDSRMETIRCLDFRYNLIEDINGLNF 197
           L        T +  +    L+   +G +++ +  F   +  I  L+  YN++  I+   F
Sbjct: 297 LRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLI-VLNLSYNMLTHIDARMF 355

Query: 198 PNLDSLYLAGNQINSLIGLES-----CVNLRILHVRNNPIK 233
            +L  L +   + NS+  +ES       NL  L + +N ++
Sbjct: 356 KDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLR 396


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 181 CLDFRYNLIEDINGLN---FPNLDSLYLAGNQINSLIGLESCVNLRILHVRNNPI 232
           CL  ++N  +D    N      +  +YL  N++N LI   S ++   +H++++ +
Sbjct: 65  CLIKKFNAYDDGGNFNEVVVREIAEIYLDENEVNKLITECSAISDADIHLKSSKL 119


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,809
Number of Sequences: 429
Number of extensions: 3213
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 358
length of database: 140,377
effective HSP length: 58
effective length of query: 300
effective length of database: 115,495
effective search space: 34648500
effective search space used: 34648500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)