GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002781-TA|BGIBMGA002781-PA|undefined
         (385 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    27   0.30 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 13  ANTPSRAPNKLPNKMPRTDKQVPAKDSTLTAVASSPAT 50
           A +PS  P+ LP +   T     +  S +T+ +S P T
Sbjct: 74  APSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTT 111


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 14  NTPSRAPNKLPNKMPRTDKQVPAKDSTLTAVAS 46
           + P   PN  P   P+++K+    ++TLT  AS
Sbjct: 103 HNPLTPPNSEPLVSPKSEKEEKDMETTLTPCAS 135


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 281 RHRRPANLNYGPTPPGTPERGAVSPVPDLA 310
           R   P  +    TP  TP++   SP  D A
Sbjct: 828 RKMEPPGVPLNSTPRSTPDKREKSPTSDKA 857


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,310
Number of Sequences: 317
Number of extensions: 3084
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 385
length of database: 114,650
effective HSP length: 58
effective length of query: 327
effective length of database: 96,264
effective search space: 31478328
effective search space used: 31478328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)