GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002781-TA|BGIBMGA002781-PA|undefined
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    31   0.27 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    30   0.63 
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    29   0.84 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   1.1  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    29   1.1  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      28   1.9  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    27   3.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   7.8  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 11  SAANTPSRAPNKLPNKMPRTDKQV--PAKDSTLTAVASSPATEISQSASN 58
           SA+NT +   N  P   P TD     PA  +T  + ++SPA   S + SN
Sbjct: 236 SASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSASNSPALSGSSTPSN 285


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 255 PLHPATPL--NHPASHRPRRTPLSPG-QLRHRRPANLNYGPTPPGTPERGAVSPVPD 308
           P  PA P+    P+ H+P   P++P      +RPA     P  P  P+R AV  VP+
Sbjct: 515 PQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPA-APVVPEAPSVPQRPAVPVVPE 570



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 255 PLHPATPLNHPASHRPRRTPLSPGQLRHRRPANLNYGPTPPGTPERGAVSPVPD 308
           P+ P  P   P+  +P   P+ P      +P      P  P  P+R AV  VP+
Sbjct: 578 PVAPVAP-EVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPE 630


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
          Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.5 bits (63), Expect = 0.84
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 16 PSRAPNKLPNKMPRTDKQVPAKDSTLTAVASSPATEISQSASNVLL 61
          P+ +P       PRT  + P   S L   +SSP   I QS+ + LL
Sbjct: 35 PASSPGSTRLTTPRTTARTPLASSPLLFESSSPGPNIPQSSRSHLL 80


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 30/208 (14%), Positives = 72/208 (34%), Gaps = 9/208 (4%)

Query: 4   VSLHTLLSAANTPSRAPNKLPNKMPRTDKQVPAKDSTLTAV------ASSPATEISQSAS 57
           +S  +++S++++PS + +        +   +P+  S+ ++       +SS +T  S S+S
Sbjct: 210 LSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSS 269

Query: 58  NVLLCSSMXXXXXXXXXXXXXXXXXXXXGRAKTEGETECDNRNPARGAHAASESSSDTGE 117
           + ++ SS                         +   T   + + +    +   SSS +  
Sbjct: 270 SSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSS 329

Query: 118 LMFSELEVFADETHTXXXXXXXXXXXXXXXXTMSGENDIEGACGYSSRDGSDILSRLLCA 177
             FS     +  T +                +    +        SS   S  L+    +
Sbjct: 330 SSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSS 389

Query: 178 EAGPDRA---ALSATAHHDADPQLSTAA 202
            + P  +   + S ++H  +    S++A
Sbjct: 390 SSRPASSSSHSSSLSSHKSSSSSKSSSA 417


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 270 PRRTPLSPGQL--RHRRPANLNYGPTPPGTPERGAVSPVPDLALHDYWPXXXXXXDNDEV 327
           P +  +S G L  +HR   N+N+ P PP TP + +    P  +  D  P      +    
Sbjct: 376 PSQVFMSTGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNTQTD 435

Query: 328 EFILDCNDT 336
            + +   +T
Sbjct: 436 SYFIQRENT 444


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 290 YGPTPPGTPERGAVSPVPDLALHD 313
           YG +PP +P R   SP  D AL D
Sbjct: 283 YGHSPPASPSRTPASPKSDSALMD 306


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 3   LVSLHTLLSAANTPSRAPNKLPNKMPRTDKQVPAKDSTLTAVASSPATEISQSASN 58
           L+ L TL SA  + S  P+ LP  MP +  Q  ++   LT   S P  ++    ++
Sbjct: 312 LLELPTL-SAVTSDSAQPHSLPASMPSSQPQSRSESLPLTHPNSEPNPKLDSQPNS 366


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 5/151 (3%)

Query: 169 DILSRLLCAEAGPDRAALSATAHHDADPQLSTAAHTDMLLLNLMRINGLTPKPSAKNGPK 228
           D+   +  +   P RA L  T      P  S  AHT +  +  ++       P   N P 
Sbjct: 336 DVYGGVNASTYNPPRAPLQRTPSGSLTPLSSRPAHTSLPPIPTVQTTSSNVPP--VNRPS 393

Query: 229 RNWNGQSSAGILSRGAHAXXXXXXG--TPLHPATPLNHPASHRPR-RTPLSPGQLRHRRP 285
                 S + ILS                L P +P+    S+    +TP SP   R    
Sbjct: 394 LKSKSPSVSNILSNQLSPISSANNDVMARLQPKSPIPATKSYSATIQTPRSPSLRRADST 453

Query: 286 ANLNYGPTPPGTPERGAVSPVPDLALHDYWP 316
           +++   P  P T  + A +   ++ +   +P
Sbjct: 454 SHIIKVPHLPDTSVKTAKTGASEIDVLSRYP 484


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.127    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,792
Number of Sequences: 5004
Number of extensions: 58638
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 10
length of query: 385
length of database: 2,362,478
effective HSP length: 74
effective length of query: 311
effective length of database: 1,992,182
effective search space: 619568602
effective search space used: 619568602
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)