GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002780-TA|BGIBMGA002780-PA|IPR002083|MATH,
IPR000315|Zinc finger, B-box, IPR001841|Zinc finger, RING-type,
IPR008974|TRAF-like, IPR010989|t-snare, IPR003649|B-box, C-terminal
         (499 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   8.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   8.6  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)

Query: 93  TNTASHR---ENYRDRCPNHQEKL-TVYCW 118
           TNT  H+   ENY  + P  +E L  ++ W
Sbjct: 220 TNTIYHQENFENYEPKSPEDEELLDAIFSW 249


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 77  CRWVEEVTQQIETMQQTNTASHRENYRDRCPNHQEKLTVYCWTCRRCICHQCALWGGTHS 136
           C++  E + Q    Q      + + Y +   N+QE  +   +  + C+  +     G +S
Sbjct: 216 CQYDTESSYQFNDPQFNFNYQYNQAYSNY-NNYQEGFSCQYYQGKNCVGGKVDETAGVYS 274

Query: 137 GHTFKPLEEVYEQHVTQI 154
           G   + LE + + ++T +
Sbjct: 275 GWEGQVLENMPQPNLTSL 292


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,383
Number of Sequences: 317
Number of extensions: 4725
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 2
length of query: 499
length of database: 114,650
effective HSP length: 60
effective length of query: 439
effective length of database: 95,630
effective search space: 41981570
effective search space used: 41981570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)