Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002780-TA|BGIBMGA002780-PA|IPR002083|MATH,
IPR000315|Zinc finger, B-box, IPR001841|Zinc finger, RING-type,
IPR008974|TRAF-like, IPR010989|t-snare, IPR003649|B-box, C-terminal
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 2e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 41 3e-04
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 40 0.001
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 38 0.002
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 36 0.010
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 33 0.069
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 33 0.12
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 33 0.12
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.16
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.37
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 30 0.86
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.86
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 29 1.1
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 29 2.0
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 28 2.6
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 3.5
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 28 3.5
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 27 4.6
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 8.0
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 8.0
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 8.0
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 18 ETLAEVFRCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRAALH 70
+ + + C IC E L HC CY C+ WL E +S CP CR L+
Sbjct: 77 QKIKKTLECPICTEAL-QRPFTTHCGHTYCYECLLNWLKESKS-CPTCRQKLY 127
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 41.1 bits (92), Expect = 3e-04
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 25 RCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRA 67
+C +CME + C + C++C+ W T ++S+CP CRA
Sbjct: 255 KCSLCME-FIHCPAATECGHIFCWSCINGW-TSKKSECPLCRA 295
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 19 TLAEVFRCFICMEKLVDAHLCPH---CSKLCCYACVRRWLTEQRSQCPHCRA 67
+L+ C IC+E + +C C AC+ +WLT + CP CRA
Sbjct: 759 SLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRA 810
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 25 RCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRAALHLHELVNCRWVEEVT 84
RC IC E A L CS C C+R +L E CP CRA L +EE+
Sbjct: 28 RCLICHEYF-RAPLITSCSHTFCSFCIRDYLRE-HPMCPACRAPEQESRLRKNTILEEIL 85
Query: 85 QQIETMQQT 93
+ + ++ T
Sbjct: 86 ESFKVIRPT 94
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 36.3 bits (80), Expect = 0.010
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 26 CFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRAALHLHELVNCRWVEEVTQ 85
C +C + +A P C KL C C++ L + +CP+C L + +N + ++ +
Sbjct: 282 CTLCKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCHRKDVLLDTLNPDYQKQ--R 339
Query: 86 QIETMQQTNTASHREN 101
+IE + ++ S+ +N
Sbjct: 340 EIEAVVKSVLGSNSKN 355
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 33.5 bits (73), Expect = 0.069
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 13 EEQIVETLAEVFRCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRAALHLH 72
E Q + + +C +C + L P+C C C+ + + S CP C +
Sbjct: 626 ETQEAQVYKGMLKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQCETPFSVS 685
Query: 73 ELV 75
+++
Sbjct: 686 DIL 688
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 32.7 bits (71), Expect = 0.12
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 17 VETLAEVFRCFICMEKLVDAHL-CPHCSKLCCYACVRRWLTEQRSQ 61
V + + RC+IC E + + L C HCS C C++R E +
Sbjct: 702 VNAIFKPSRCYICSESVWGSELRCFHCSISCHSRCLKRLFAESEHE 747
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 32.7 bits (71), Expect = 0.12
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 26 CFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHCRAALHLHELVNCRWVEEVTQ 85
C IC + ++ C L C C+ WL + S CP C+ L+ + N ++ E ++
Sbjct: 1092 CIICRD-IIKQGFITTCGHLYCSFCLEAWL-KHSSSCPMCKTKLNKN---NAYYIGE-SR 1145
Query: 86 QIETMQQTNTASHRENYR 103
I + Q+ T ++ + R
Sbjct: 1146 DIYSRQEFVTGFNKRDER 1163
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 32.3 bits (70), Expect = 0.16
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 25 RCFICMEKLVDAHLC---PHCSKLCCYACVRRWLTEQRSQCPHCR 66
RC +C+ C C+ C+ +WLT ++ CP CR
Sbjct: 524 RCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 31.1 bits (67), Expect = 0.37
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 6 DKGNGNGEEQIVETLAEVFRCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCPHC 65
D G E++ +T + +C +C + + C CY C+++ + ++ +CP C
Sbjct: 608 DTGVSTSAEEL-KTFRAMCKCSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPIC 666
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 29.9 bits (64), Expect = 0.86
Identities = 11/75 (14%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 130 LWGGTHSGHTFKPLEEVYEQHVTQIRDEVTQLRRRLMELISLVQDVERNVESVRAAKDER 189
LW H GHT + + + + + E+++L + ++ ++++ + + ++R K +
Sbjct: 68 LWTNLHGGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDL-IAALRQDKGQN 126
Query: 190 VREIRNAVELMISRL 204
++ ++ + R+
Sbjct: 127 LQHLQEHYNITPERI 141
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 29.9 bits (64), Expect = 0.86
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 144 EEVYEQHVTQIRD--EVTQLRRRLMELISLVQDVERNVESVRAAKDERVREIRNAVELMI 201
EEV + + T+I D E+T+ RR EL+S + R +E AK+ + R++ + +I
Sbjct: 105 EEV-DVNGTKITDTSELTERERRKQELVSKKAEASRKMEVKAPAKESKKRKVNELSQDVI 163
Query: 202 S 202
S
Sbjct: 164 S 164
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 26 CFICMEKLV--DAHLCPHCSKLCCYACVRRWLTEQRSQCPHC 65
C IC+E D + C C+ +W+ + R CP C
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTC 362
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 247 IVPSYDSST-FPLANFTQLQHAAAPVYSAPLHVNGLC 282
++ SY+ ST TQ Q ++ YS +HV GLC
Sbjct: 212 VILSYECSTNSDTPEITQYQEVSSCAYSMTIHVPGLC 248
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 42 CSKLCCYACVRRWLTEQRSQCPHCRAAL 69
C + + C+R WL E++ CP CR ++
Sbjct: 328 CGHILHFHCLRNWL-ERQQTCPICRRSV 354
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 26 CFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQCP 63
C IC EK+ + + + CY C++ WL +CP
Sbjct: 257 CKICGEKIKNPAVLS-TGFVFCYPCIQVWLQRHPFKCP 293
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 26 CFICMEKLVDAHLCPHCSKLCCY---ACVRRWLTEQRSQCPHCRAALHL 71
C IC E+ C C R WL+ + CP A LHL
Sbjct: 230 CIICFEEFAAGDRVARIEYCLCIFHLKCYRDWLSTGAAGCPVHAATLHL 278
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 143 LEEVYEQHVTQIRDEVTQLRRRLMELISLVQDVERNVESVRAAKDERVREIRNAVELMIS 202
+E QH +++D + + ++ SL+ + + ++S +++E+ + EL IS
Sbjct: 267 METAELQHQAELQDFASNIEQKAN---SLIMEYKNELQSAEEHFSHKIKELTSENELKIS 323
Query: 203 RL----DSALK 209
RL DS LK
Sbjct: 324 RLQEEKDSLLK 334
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 8.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 37 HLCPHCSKLCCYACVRRWLTEQRSQCPHC 65
H H +++ C C ++ + CPHC
Sbjct: 360 HTFEHANRIICGYCAMESFYKKDATCPHC 388
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 418 EMSRNSLAATRAVTTGTSSSQSNAGPNEADNP 449
+MS + +T +T G SS+ SN+ PNEA P
Sbjct: 664 DMSHGDMLSTFKLT-GESSNGSNSTPNEAFQP 694
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 26 CFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRS-QCPHCR 66
CFIC E + + + P C+ C+ C R ++ +C C+
Sbjct: 81 CFICAEGITYSCVLP-CNHRMCHVCALRLRALYKTKECTFCK 121
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.132 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,103
Number of Sequences: 5004
Number of extensions: 87299
Number of successful extensions: 311
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 28
length of query: 499
length of database: 2,362,478
effective HSP length: 76
effective length of query: 423
effective length of database: 1,982,174
effective search space: 838459602
effective search space used: 838459602
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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