GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002780-TA|BGIBMGA002780-PA|IPR002083|MATH,
IPR000315|Zinc finger, B-box, IPR001841|Zinc finger, RING-type,
IPR008974|TRAF-like, IPR010989|t-snare, IPR003649|B-box, C-terminal
         (499 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           33   0.023
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    27   0.88 
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    27   0.88 
AY146746-1|AAO12061.1|  333|Anopheles gambiae odorant-binding pr...    25   6.2  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   6.2  
AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.           24   8.2  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   8.2  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 32.7 bits (71), Expect = 0.023
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 98  HRENYRDRCPNHQEKLTVYCWTCRRCICHQCALWGGTHSG-HTFKPLEEVYEQHVTQIRD 156
           H E +R++  NHQ  ++     C + +    + +   H   + + PL  +  Q+  Q RD
Sbjct: 309 HGEGFREKAVNHQGMISAMISACEKTMQRMTSSFPDPHRDVYWWTPLIALLRQNCEQTRD 368

Query: 157 EVTQLRRRLMELISLVQDVERNVE---SVRAAKDERVREIRNAVE 198
            + Q        ++  Q      E   ++RA+K    +E+ +A E
Sbjct: 369 RMQQTSDLQNRSLAAAQYRTAKAELDRAIRASKKAAFQELIDAAE 413


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 5   GDKGNGNGEEQIVETLAEV--FRCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQC 62
           GD  +G+  +  + +  E   F+C++C E  VD  +   C    C  C      ++ S+C
Sbjct: 224 GDDSDGDDTKYEIHSDDEELPFKCYVCRESFVDP-IVTKCKHYFCERCALAQY-KKSSRC 281

Query: 63  PHC 65
             C
Sbjct: 282 AIC 284


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 5   GDKGNGNGEEQIVETLAEV--FRCFICMEKLVDAHLCPHCSKLCCYACVRRWLTEQRSQC 62
           GD  +G+  +  + +  E   F+C++C E  VD  +   C    C  C      ++ S+C
Sbjct: 224 GDDSDGDDTKYEIHSDDEELPFKCYVCRESFVDP-IVTKCKHYFCERCALAQY-KKSSRC 281

Query: 63  PHC 65
             C
Sbjct: 282 AIC 284


>AY146746-1|AAO12061.1|  333|Anopheles gambiae odorant-binding
           protein AgamOBP43 protein.
          Length = 333

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 413 ERLSLEMSRNSLAATRAVTTGTSSSQSNAGPNEADNPAQNNPVD 456
           ++L L  S  + AAT A  T T++++ +  PN     +   P D
Sbjct: 267 DQLDLYASLTTAAATAAAMTTTTTTKKSTPPNAIPALSVRKPSD 310


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 8/38 (21%), Positives = 24/38 (63%)

Query: 145 EVYEQHVTQIRDEVTQLRRRLMELISLVQDVERNVESV 182
           E + + + QI  +++++ RR+ +    +QD++ ++ +V
Sbjct: 747 EDFTRELDQIGPKISEIERRMQQRDMKIQDIKESMNNV 784


>AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.
          Length = 194

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 47  CYACVRRWLTEQRSQCPHC 65
           CY C   +L E++ Q  HC
Sbjct: 140 CYCCRESFLRERQLQLTHC 158


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 422 NSLAATRAVTTGTSSSQSNAGPNEADNPAQNN 453
           N L    AVTTG +++    G N    P  NN
Sbjct: 547 NDLQQAAAVTTGATTADLLLGDNGVAVPLNNN 578


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,748
Number of Sequences: 2123
Number of extensions: 21279
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 8
length of query: 499
length of database: 516,269
effective HSP length: 67
effective length of query: 432
effective length of database: 374,028
effective search space: 161580096
effective search space used: 161580096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)