GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002780-TA|BGIBMGA002780-PA|IPR002083|MATH,
IPR000315|Zinc finger, B-box, IPR001841|Zinc finger, RING-type,
IPR008974|TRAF-like, IPR010989|t-snare, IPR003649|B-box, C-terminal
         (499 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   1.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 414 RLSLEMSRNSLAATRAVTTGTSSSQSNAGPNEADNPAQNNP 454
           R +L M+R SL  ++ V+   S S+   G  +   P +N+P
Sbjct: 161 RRTLHMNRTSLKTSKIVSYPKSRSRKKGGLKDNLIPDKNDP 201


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 168 LISLVQDVERNVESVRAAKDERVREIRNAV 197
           L+ +V D +RN   V   K    R++RN V
Sbjct: 112 LLGIVDDYQRNPSVVGRKKSSGWRKLRNIV 141


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,594
Number of Sequences: 429
Number of extensions: 5631
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 499
length of database: 140,377
effective HSP length: 61
effective length of query: 438
effective length of database: 114,208
effective search space: 50023104
effective search space used: 50023104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)