GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002779-TA|BGIBMGA002779-PA|IPR000994|Peptidase M24,
catalytic core, IPR013953|FACT complex subunit Spt16p/Cdc68p,
IPR013719|Domain of unknown function DUF1747, eukaryote
         (1136 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    27   0.87 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   6.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    24   8.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    24   8.1  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 27.1 bits (57), Expect = 0.87
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 742 QFYTEVGEITT--DLGKHQHMHDRDDLAAEQSERELRHKLKVAF 783
           +FY  +G+++T  D  K+Q  H  D  ++ Q+    +H+LK AF
Sbjct: 555 RFYNLLGKLSTIEDADKNQCRHYLDAKSSVQNYSLAKHQLKEAF 598


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 464 ESKLRTEHSSEEKRKEHQRELAISLNEKAK--ERLAKQ 499
           +SK+     ++E+R +H+RE+ +   E+ +  ERL K+
Sbjct: 22  DSKIDLRSRTKEERLQHRREVWLIQQEREREHERLMKK 59


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 464 ESKLRTEHSSEEK-RKEHQRELAISLNEKAKERLAKQSTGKDTEKLRKSTVSYKSISQMP 522
           + KL  E +S ++  +  +RE     NE+   +  + S G+  ++  +       I    
Sbjct: 248 KEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSN 307

Query: 523 RENEVKELKLYVDRKYETVILPIFGVPVP 551
             N       Y  +K    I+ I  +PVP
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 464 ESKLRTEHSSEEK-RKEHQRELAISLNEKAKERLAKQSTGKDTEKLRKSTVSYKSISQMP 522
           + KL  E +S ++  +  +RE     NE+   +  + S G+  ++  +       I    
Sbjct: 259 KEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSN 318

Query: 523 RENEVKELKLYVDRKYETVILPIFGVPVP 551
             N       Y  +K    I+ I  +PVP
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIINIEQIPVP 347


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,327
Number of Sequences: 429
Number of extensions: 11915
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 7
length of query: 1136
length of database: 140,377
effective HSP length: 65
effective length of query: 1071
effective length of database: 112,492
effective search space: 120478932
effective search space used: 120478932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)