GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002778-TA|BGIBMGA002778-PA|IPR001553|RecA bacterial DNA
recombination
         (262 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    23   3.1  
AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.    22   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.1  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   9.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.4  

>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 136 DTKGDFSALRIQKILEKC 153
           DTK D+ +L+  K +E+C
Sbjct: 33  DTKPDYKSLQELKYMERC 50


>AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 155 YSFKEVAAIMSRIHISYIWTMEEL 178
           Y  +E+    SR H   ++T EEL
Sbjct: 7   YQLEELEKAFSRTHYPDVFTREEL 30


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 35   DVEKLSNICKLSIPQILEARNRILTKFSAP 64
            D++   N+C      +L   NR+L  ++ P
Sbjct: 2166 DLDDFKNLCGCEEYPLLRTINRVLRGYAKP 2195


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 214 DNKLDTTSRIDREYDAVQVYK 234
           DNK D  + ++ +YD   VY+
Sbjct: 95  DNKRDWWNELEAKYDKDGVYR 115


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 23  SRIITILDFLQED 35
           S +ITILD+ +ED
Sbjct: 214 SHVITILDWTKED 226


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,444
Number of Sequences: 317
Number of extensions: 1778
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 262
length of database: 114,650
effective HSP length: 56
effective length of query: 206
effective length of database: 96,898
effective search space: 19960988
effective search space used: 19960988
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 42 (21.0 bits)