Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002778-TA|BGIBMGA002778-PA|IPR001553|RecA bacterial DNA
recombination
(262 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 50 5e-07
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 47 2e-06
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 42 1e-04
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 38 0.002
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 31 0.13
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 29 0.52
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch... 27 2.1
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 2.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.8
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 6.4
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 6.4
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 49.6 bits (113), Expect = 5e-07
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 4 LTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEAR-NRILTKFS 62
L +EG +T IK + ++ T+ +L L I I EA+ +++L + S
Sbjct: 47 LQMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQL-----LLIKGISEAKADKLLGEAS 101
Query: 63 APVINGSCFIDKI---RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ 119
V G + R I+I +G K LD +L G+ +ITEL G +GK+Q+
Sbjct: 102 KLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHT 161
Query: 120 IAINCAKET-----HKTVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
+A+ C LYIDT+G F +R+ + ++ + +EV
Sbjct: 162 LAVTCQLPIDMGGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEV 207
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 47.2 bits (107), Expect = 2e-06
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 14 DHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFID 73
D I F+ ++ +D L D+ +L S ++L+ +I + PV C
Sbjct: 13 DEKIASAFELGEVSTVDLLTLDITELERRTHCSQSELLQLIEQI-SLLLQPV---RCSAS 68
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----T 128
K+ ++ +G LD L+ GIP +TE+CG +GSGK+Q +Q+ +
Sbjct: 69 KVTSKYLT--TGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGM 126
Query: 129 HKTVLYIDTKGDFSALRIQKILEKCQY 155
+K ++I T+ S L +++ E +Y
Sbjct: 127 NKAAVFISTE---SGLETKRLFELARY 150
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 72 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE---- 127
I + RK SI +G + L+ +L GI + +ITE+ G GKTQ++ + +
Sbjct: 85 ISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTAQLPRDMG 144
Query: 128 -THKTVLYIDTKGDFSALRIQKILEK 152
V +IDT+G F RI+ I E+
Sbjct: 145 GAEGKVAFIDTEGTFRPDRIKAIAER 170
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 96 GIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILE 151
G+ I+E+CG G GKT LALQI N A + V++++T R++++L+
Sbjct: 40 GLKRGYISEVCGAPGMGKTSLALQITAN-ALLSGSRVIWVETCQPIPMERLRQLLD 94
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/70 (22%), Positives = 35/70 (50%)
Query: 22 QSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTIS 81
QS +LD ++ + K S CK + +E+R+ ++T + + + + + S
Sbjct: 183 QSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEESLKS 242
Query: 82 IKSGVKNLDN 91
++S + NL+N
Sbjct: 243 VESIISNLEN 252
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 29.5 bits (63), Expect = 0.52
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 88 NLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN-CAKETHKTVLYIDTKGDFSALRI 146
+++ +L G T+ + G + SGKT+L +A N + + + VL + ++ D+S R+
Sbjct: 30 HIEKVLYSGSVNGTLLVIEGNSCSGKTELLYHLASNVLLRSSQELVLIVSSEWDWSIKRL 89
Query: 147 QKILEKCQYSFKEVA 161
IL + S + V+
Sbjct: 90 TFILHERLISSRGVS 104
>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 80 ISIKSGVKNLDNMLNRGIPAKTITEL--CGIAGSGKTQLALQIAINCAKETHKTVLYIDT 137
+ IK G + LD G PA+ ITE C + G + N A + + +
Sbjct: 120 MGIKPGSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFV 179
Query: 138 KGDF 141
KGDF
Sbjct: 180 KGDF 183
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 98 PAKTITELCGIAGSGKTQLALQIA 121
P K I L G+AG+GKT LA IA
Sbjct: 414 PDKRIMMLTGLAGAGKTTLAHVIA 437
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 107 GIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSR 166
G G+GKT +A +A NC+ + K ++ D + + + + + F+E +
Sbjct: 413 GPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPS 472
Query: 167 I 167
I
Sbjct: 473 I 473
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 105 LCGIAGSGKTQLALQIA 121
+CG G+GKT LA Q+A
Sbjct: 13 ICGTPGTGKTTLAEQVA 29
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 50 ILEARNRILTKFSAPVINGSC 70
+LE RNR++ FS P+ +C
Sbjct: 829 LLEFRNRLINSFSGPLDKNTC 849
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.136 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,037,408
Number of Sequences: 5004
Number of extensions: 38434
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 13
length of query: 262
length of database: 2,362,478
effective HSP length: 71
effective length of query: 191
effective length of database: 2,007,194
effective search space: 383374054
effective search space used: 383374054
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)
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