Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002778-TA|BGIBMGA002778-PA|IPR001553|RecA bacterial DNA
recombination
(262 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0287 - 2152179-2152424,2153300-2153339,2153612-2153831,215... 60 2e-09
05_01_0163 - 1125364-1125422,1126062-1126205,1126640-1126756,112... 58 9e-09
09_01_0023 - 434250-434408,435614-435684,436053-436143,436208-43... 50 1e-06
12_02_0419 + 18916995-18917090,18917703-18917851,18917873-189180... 47 1e-05
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209... 44 1e-04
02_04_0256 + 21331396-21332268 44 1e-04
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 35 0.058
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553... 33 0.23
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178... 33 0.31
01_07_0154 - 41532220-41533252,41533786-41533971,41534759-415350... 31 0.71
03_05_0444 + 24396375-24396584,24396968-24397021,24397426-243975... 31 0.94
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369... 30 1.6
08_01_0762 - 7319130-7319848,7320878-7321343 30 1.6
06_03_0047 - 15872817-15872911,15873648-15873897 30 2.2
03_03_0032 + 13927959-13930040,13930322-13930798 29 2.9
04_01_0078 - 879016-881288,884676-885141 29 3.8
09_04_0541 + 18437075-18440062 29 5.0
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 29 5.0
04_03_0272 + 13725262-13725443,13726036-13726114,13726329-137263... 29 5.0
11_06_0342 - 22523610-22524332 28 6.6
11_03_0176 - 11260900-11261286,11261459-11261593,11262971-112631... 28 6.6
09_02_0154 + 5055946-5058721,5058754-5058770 28 6.6
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 28 6.6
07_03_0950 + 22828787-22828982,22829091-22829164,22829512-228295... 28 6.6
03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,869... 28 6.6
08_02_1137 + 24623967-24623991,24625815-24625831,24626100-246262... 28 8.8
01_06_1692 - 39232475-39232867,39233176-39233310,39233770-392339... 28 8.8
>12_01_0287 -
2152179-2152424,2153300-2153339,2153612-2153831,
2153917-2153995,2154087-2154155,2154237-2154329,
2154411-2154477,2154579-2154640,2154729-2154774,
2155359-2155404,2155490-2155547,2155717-2155755,
2155849-2155920,2156067-2156158,2157036-2157135
Length = 442
Score = 60.1 bits (139), Expect = 2e-09
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 17 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 73
+K L + I T + + L+ I LS + +I EA ++L S I GS +
Sbjct: 44 VKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLL---SQGFITGSDLLI 100
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK--- 130
K RK + I +G + LD +L GI ITE G SGKTQLA + ++ H
Sbjct: 101 K-RKSVVRITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSAQLPIHMHGG 159
Query: 131 --TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNL 185
V YIDT+G F RI I E+ + A++ I + +T E NL L
Sbjct: 160 NGKVAYIDTEGTFRPERIVPIAERFG---MDANAVLDNIIYARAYTYEHQYNLLLGL 213
>05_01_0163 -
1125364-1125422,1126062-1126205,1126640-1126756,
1126835-1126926,1127942-1128022,1128323-1128378,
1128496-1128559,1128645-1128748,1129578-1129724,
1129876-1129989,1130070-1130153
Length = 353
Score = 57.6 bits (133), Expect = 9e-09
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
L H+ +L R+ T D L +L + I A + P
Sbjct: 11 LPPHLAHILAARRLTTAKDVLSLPEVELMGVLDAGIHTARAAVAHVSEIACPPYQTALAL 70
Query: 72 IDKIR-KGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCA 125
++ R +G + + ++ LD L+ GIPA +TE+ G +G GKTQ L++A+ C
Sbjct: 71 LEAFRARGDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECY 130
Query: 126 KETHKTVLYIDTKGDFSALRIQKILEK 152
+ VLYIDT+ FS+ R+ +I EK
Sbjct: 131 GGLNGRVLYIDTESKFSSRRMIEIGEK 157
>09_01_0023 -
434250-434408,435614-435684,436053-436143,436208-436321,
436523-436657,436832-436913,437095-437195,437425-437490
Length = 272
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 68 GSCFIDK---IRKGTIS---IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIA 121
G CF+D ++ T + + +G++ +D +L G+ +TE+ G + SGKTQ+ L A
Sbjct: 30 GQCFLDGMDLLKDATENKRFLPTGLQGVDALLGGGLRQGQLTEITGQSSSGKTQVCLCSA 89
Query: 122 INCAKETHKTVLYIDTKGDFSALRIQKILE 151
+ A V+Y+DT FS RI +I++
Sbjct: 90 SHVAARQLGVVMYLDTSNSFSPSRIARIVD 119
>12_02_0419 +
18916995-18917090,18917703-18917851,18917873-18918063,
18918178-18918269,18918456-18918550,18918920-18919049,
18919178-18919219
Length = 264
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 80 ISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK-----TVLY 134
I + +G + LD +L+ GI +ITE+ G SGKTQL + + C + LY
Sbjct: 131 IQVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALY 190
Query: 135 IDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHIS 170
ID +G F R+ +I ++ + A + R S
Sbjct: 191 IDAEGTFRPQRLLQIADRFAIMIVDSATALYRTDFS 226
>11_01_0283 -
2095291-2095566,2095962-2096348,2096523-2096881,
2097275-2097398,2097480-2097548,2098536-2098584,
2099185-2099299,2099823-2099872,2099969-2100106,
2101136-2101197,2102066-2102180,2103433-2103664,
2103748-2103826,2103925-2103993,2104079-2104171,
2104577-2104622,2105223-2105268,2105354-2105411,
2105577-2105615,2105712-2105783,2105930-2106021,
2106824-2106923
Length = 889
Score = 44.0 bits (99), Expect = 1e-04
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 17 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 73
+K L + I T + + L+ I LS + +I EA ++L S + GS +
Sbjct: 44 VKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLL---SQGFMTGSDLLI 100
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN 123
K RK + I +G + LD +L GI ITE G SGKTQLA + ++
Sbjct: 101 K-RKSVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVS 149
>02_04_0256 + 21331396-21332268
Length = 290
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI 122
R G +S+ G LD +L+ G+P ++TE+ G + SGKTQL LQ+A+
Sbjct: 39 RAGKLSL--GCPVLDRLLSGGLPPASVTEIAGESASGKTQLCLQLAL 83
>11_06_0395 +
23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 35.1 bits (77), Expect = 0.058
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 96 GIPAKTITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKIL 150
GI +ITE+ G SGKTQL + + C + LYID +G F R+ +I
Sbjct: 96 GIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQIA 155
Query: 151 EK 152
++
Sbjct: 156 DR 157
>09_02_0569 -
10752756-10753164,10753229-10753644,10754149-10755349,
10756770-10756991,10757615-10757767,10757883-10758034,
10758142-10758222,10758353-10758598,10759394-10759516
Length = 1000
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 105 LCGIAGSGKTQLALQI--AINCAKETHK--TVLYID 136
+CG+ GSGKT L Q+ +CA ETH+ V+Y++
Sbjct: 480 ICGMGGSGKTTLLKQLNNIFSCAAETHEFDHVIYVE 515
>01_06_1488 +
37716986-37717076,37717424-37717558,37717755-37717831,
37717934-37718181,37718503-37718559,37718665-37718800,
37718944-37719001,37719110-37719195,37719270-37719326,
37719537-37719557,37720553-37720954,37721500-37721647,
37721940-37722036,37724065-37724202,37724496-37724598,
37724792-37724828,37724905-37725014,37725141-37725164
Length = 674
Score = 32.7 bits (71), Expect = 0.31
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 102 ITELCGIAGSGKTQLALQIAINCA-----KETH-----KTVLYIDTKGDFSALRIQKIL 150
+ E+ G + SGK+QL L A+ C K T+ K V+Y+D F LR+ +IL
Sbjct: 439 VVEIAGPSNSGKSQLLLTAAVQCILPKEWKGTYFGGLGKVVMYLDLDCRFDVLRLAQIL 497
>01_07_0154 -
41532220-41533252,41533786-41533971,41534759-41535039,
41535184-41535318,41535427-41535573,41535841-41536010,
41536110-41536197,41536999-41537219,41537725-41537810,
41537916-41537962
Length = 797
Score = 31.5 bits (68), Expect = 0.71
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 82 IKSGVKNLDNMLN-RGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGD 140
I +G LD L G+P + EL G SGKT LAL + + A++ YID +
Sbjct: 100 ISTGSLKLDIALGIGGLPKGRMVELFGKEASGKTTLALHV-VKEAQKKGGCCAYIDAENA 158
Query: 141 FS 142
F+
Sbjct: 159 FN 160
>03_05_0444 +
24396375-24396584,24396968-24397021,24397426-24397517,
24397610-24397685,24397838-24397900,24398002-24398094,
24398694-24398819,24398895-24398999,24399071-24399127,
24399149-24399274,24399348-24399424,24400312-24400384,
24400430-24400492
Length = 404
Score = 31.1 bits (67), Expect = 0.94
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 84 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 141
SG LD L G+P + E+ G SGKT LAL AI ++ + +D + F
Sbjct: 124 SGCLTLDFALGGGLPKGRVVEVYGPESSGKTTLALH-AIAEVQKLGGNAMLVDAEHAF 180
>11_04_0359 +
16735204-16735676,16736597-16736647,16736860-16736934,
16737011-16737062,16737147-16737280,16737397-16737511,
16737665-16737751,16737855-16737903,16738351-16738435,
16738641-16738715,16738848-16739029,16739905-16739969
Length = 480
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 87 KNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTV 132
+NL N ++ + K+ L G +GSGKT L LQ+ ++ TH T+
Sbjct: 186 QNLLNEISLNLKEKSFGLLFGRSGSGKTTL-LQLLAGLSEPTHGTI 230
>08_01_0762 - 7319130-7319848,7320878-7321343
Length = 394
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 3 KLTHVEGTALTDHVIKMLFQSRIIT-ILDFLQEDVEKLSNICKLSIPQILEARNRILT-- 59
++T + T L D V + ++ +I+ +DF+ + + +C L + + LE + +T
Sbjct: 196 EITGYQDTLLAD-VYRQFYRECVISGTIDFVWGEATAVFQMCHLLVRRPLEGSHNTITAQ 254
Query: 60 --KFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNR 95
S PV+ S F+ ++ +S K ++ +D L R
Sbjct: 255 GRNHSEPVVARSGFV--FQECNVSTKEDLRGVDTYLGR 290
>06_03_0047 - 15872817-15872911,15873648-15873897
Length = 114
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 38 KLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGV 86
+ SN C++ I AR ++ + +P+ NGS I K G + +K V
Sbjct: 36 RTSNGCQICIRPPFLAREYLMERSQSPLSNGSGIITKFHPGHLQMKKQV 84
>03_03_0032 + 13927959-13930040,13930322-13930798
Length = 852
Score = 29.5 bits (63), Expect = 2.9
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 5 THVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAP 64
+ V L V+K+L + T + E + + L + ++R L K +
Sbjct: 524 SQVRAVKLALKVVKILVSTTGSTGKMLRRGVAENVFTVSSLRVVLQHGQQHRALQKLATD 583
Query: 65 VINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC 124
+++G DK ++ + VK L L+ + A+T EL G AG LAL+ +C
Sbjct: 584 ILSGLAMDDKGKQVIVGTGGVVKQL---LSIFVDAET--ELGGEAGEALAMLALESEASC 638
Query: 125 A 125
A
Sbjct: 639 A 639
>04_01_0078 - 879016-881288,884676-885141
Length = 912
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 101 TITELCGIAGSGKTQLALQIAINCAKETH-KTVLYIDTKGDFSALRI-QKILE----KCQ 154
T + GIAGSGKT LA + ++ H V+++D FS +I +++LE +
Sbjct: 45 TTIGIYGIAGSGKTILAQYVCEYEKEDGHFSPVMWVDVSQSFSVDKIYRQMLEGAIGRPS 104
Query: 155 YSFKEVAAIMSRI 167
Y ++ + A+ +++
Sbjct: 105 YKYQNLDALENKL 117
>09_04_0541 + 18437075-18440062
Length = 995
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 107 GIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEVAA 162
G +G GKT+LAL+ A + + +K VL+I G+ LR Q IL Y +++A
Sbjct: 467 GASGIGKTELALEFAYRYS-QRYKMVLWIG--GEARYLR-QNILNLSMYLGLDISA 518
>04_04_1189 +
31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 28.7 bits (61), Expect = 5.0
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 10 TALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGS 69
+ + H IK RI I++ LQ+ +S + +L IP N+ + S
Sbjct: 198 STMLPHDIKRDISKRINRIVNNLQKTGNSVSGVLQLEIPCRGLTSNQRHRMARNTRLTTS 257
Query: 70 CFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLA 117
I+ G + K + ++ ++N G + + GI G GKT LA
Sbjct: 258 VPIEPKVYGRDADKDRI--IEMLINEGSSDLLVIPIVGIGGIGKTTLA 303
>04_03_0272 +
13725262-13725443,13726036-13726114,13726329-13726390,
13726575-13726700,13726780-13726879,13727143-13727226,
13727328-13727462
Length = 255
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 83 KSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK-GDF 141
K +K +DN +NR + T ++ G G + A ++AI C + V + DF
Sbjct: 5 KIAIKRIDNTMNRQV---TFSKRRG----GLMKKARELAILCDADVGLIVFSCTGRLYDF 57
Query: 142 SALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLKN 187
S+ ++ I+E+ Q + +E +++ + + W E+ L + ++N
Sbjct: 58 SSSSMKSIIERYQEAGEEHCRLLNPMSEAKFW-QREVTTLRQQVQN 102
>11_06_0342 - 22523610-22524332
Length = 240
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 79 TISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 120
++ ++ + L L G+P + + G G GKT LAL +
Sbjct: 120 SVGMEDAIGKLGAWLTEGLPDLRVLAVVGFGGLGKTTLALAL 161
>11_03_0176 -
11260900-11261286,11261459-11261593,11262971-11263117,
11263754-11263926,11264661-11264748,11265587-11265804,
11266367-11266424,11267133-11267219
Length = 430
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 82 IKSGVKNLDNMLN-RGIPAKTITELCGIAGSGKTQLALQIAINCAK 126
I +G LD L G+P + E+ G SGKT LAL I K
Sbjct: 103 ISTGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHIIAEAQK 148
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 92 MLNRGIPAKTITELCGIAGSGKTQLALQI 120
+L G +T+ +CG+ G GKT LA I
Sbjct: 189 LLIHGEETRTVISICGMGGLGKTTLARAI 217
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 61 FSAPVINGSCFIDKIRKGTISIKSGVKNLD 90
F V+N F +K+ G IS + G++N+D
Sbjct: 138 FDVVVVNLYPFYNKVTSGVISFEDGIENID 167
>07_03_0950 +
22828787-22828982,22829091-22829164,22829512-22829570,
22830148-22830487,22830623-22833376
Length = 1140
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 7 VEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTK---FSA 63
++ A T+H+I S++ T+L+ + + + N LS+ + L ARN +K A
Sbjct: 794 MQSIANTEHIIA---PSQLPTVLESINDGQQLNGNRSTLSLAEFLVARNANFSKNVISEA 850
Query: 64 PVINGSCFIDKIRKGTISIKSGVKNLDNML 93
NG + ++ ++ +K+++ +L
Sbjct: 851 LSSNGGAEMHTFKRTSMESAKNIKDINQLL 880
>03_02_0466 -
8690469-8690522,8691008-8691113,8691216-8691457,
8691477-8691546,8692224-8692499,8693058-8693137,
8693408-8693489,8693566-8693663,8693868-8693936,
8694015-8694113,8694681-8694737,8694874-8695039,
8695152-8695196,8695286-8695347,8695425-8695532,
8695719-8695769,8695843-8695944,8696362-8696448,
8696560-8696823,8696977-8697189,8697337-8697398,
8697517-8697849,8697943-8698138
Length = 973
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 98 PAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQ-KILEKCQ 154
P + + LCG G GKT LA A +C V+ I+ D SA I+ KIL+ Q
Sbjct: 353 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYH----VVEINASDDRSASSIEPKILDVIQ 406
>08_02_1137 +
24623967-24623991,24625815-24625831,24626100-24626216,
24626399-24626440,24627246-24629705
Length = 886
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 94 NRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI 135
++G + ++ + G +G GKT+LAL+ A + + +K VL+I
Sbjct: 346 SKGYGSASVLCITGSSGIGKTELALEFAYRYS-QRYKMVLWI 386
>01_06_1692 -
39232475-39232867,39233176-39233310,39233770-39233916,
39234131-39234303,39235201-39235288,39235508-39235725,
39235968-39236025,39236259-39236315,39237022-39237099
Length = 448
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 82 IKSGVKNLDNMLNRG-IPAKTITELCGIAGSGKTQLALQIAINCAK 126
+ +G +LD L G +P + E+ G SGKT LAL + K
Sbjct: 119 VSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAEAQK 164
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.136 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,176,851
Number of Sequences: 37544
Number of extensions: 215312
Number of successful extensions: 527
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 28
length of query: 262
length of database: 14,793,348
effective HSP length: 81
effective length of query: 181
effective length of database: 11,752,284
effective search space: 2127163404
effective search space used: 2127163404
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)
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