Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002778-TA|BGIBMGA002778-PA|IPR001553|RecA bacterial DNA
recombination
(262 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB013341-1|BAA25914.1| 328|Homo sapiens Trad protein. 107 3e-23
Y15572-1|CAA75681.1| 328|Homo sapiens R51H3 protein. 107 4e-23
BC014422-1|AAH14422.1| 328|Homo sapiens RAD51-like 3 (S. cerevi... 107 4e-23
AY623116-1|AAT38112.1| 328|Homo sapiens RAD51-like 3 (S. cerevi... 107 4e-23
AF034956-1|AAC39719.1| 289|Homo sapiens RAD51D protein. 64 6e-10
AB018360-1|BAA33779.1| 95|Homo sapiens TRAD-d4 protein. 59 1e-08
Y15571-1|CAA75680.1| 350|Homo sapiens R51H2 protein. 51 4e-06
U92074-1|AAB63358.1| 350|Homo sapiens RecA-like protein protein. 51 4e-06
U84138-1|AAC39723.1| 350|Homo sapiens DNA repair protein RAD51B... 51 4e-06
DQ160197-1|AAZ85144.1| 350|Homo sapiens RAD51-like 1 (S. cerevi... 51 4e-06
CR536560-1|CAG38797.1| 350|Homo sapiens RAD51L1 protein. 51 4e-06
BC030219-1|AAH30219.1| 384|Homo sapiens RAD51-like 1 (S. cerevi... 51 4e-06
BT019705-1|AAV38511.1| 339|Homo sapiens RAD51 homolog (RecA hom... 51 5e-06
BC107753-1|AAI07754.1| 376|Homo sapiens RAD51 homolog C (S. cer... 51 5e-06
AY623112-1|AAT38108.1| 376|Homo sapiens RAD51 homolog C (S. cer... 51 5e-06
AF029669-1|AAC39604.1| 376|Homo sapiens Rad51C protein. 51 5e-06
D14134-1|BAA03189.1| 339|Homo sapiens RAD51 protein. 50 8e-06
D13804-1|BAA02962.1| 339|Homo sapiens HsRad51 protein. 50 8e-06
CR536559-1|CAG38796.1| 339|Homo sapiens RAD51 protein. 50 8e-06
AY196785-1|AAN87149.1| 339|Homo sapiens RAD51 homolog (RecA hom... 50 8e-06
AF233744-1|AAF69145.1| 339|Homo sapiens RAD51 protein. 50 8e-06
AF165094-1|AAD49705.1| 339|Homo sapiens Rad51 protein. 50 8e-06
BT007417-1|AAP36085.1| 346|Homo sapiens X-ray repair complement... 42 0.003
BC011725-1|AAH11725.1| 346|Homo sapiens X-ray repair complement... 42 0.003
BC001036-1|AAH01036.1| 346|Homo sapiens X-ray repair complement... 42 0.003
AF508041-1|AAM23015.1| 346|Homo sapiens X-ray repair complement... 42 0.003
AF037222-1|AAC04805.1| 346|Homo sapiens XRCC3 protein. 42 0.003
AF035586-1|AAC05368.1| 346|Homo sapiens X-ray repair cross-comp... 42 0.003
D63882-1|BAA09932.1| 340|Homo sapiens HsLim15 protein. 38 0.027
CR456486-1|CAG30372.1| 340|Homo sapiens DMC1 protein. 38 0.027
BC125164-1|AAI25165.1| 340|Homo sapiens DMC1 dosage suppressor ... 38 0.027
BC125163-1|AAI25164.1| 340|Homo sapiens DMC1 dosage suppressor ... 38 0.027
AY520538-1|AAR89915.1| 340|Homo sapiens DMC1 dosage suppressor ... 38 0.027
AL022320-2|CAB45656.1| 340|Homo sapiens DMC1 dosage suppressor ... 38 0.027
D64108-1|BAA10970.1| 340|Homo sapiens DMC1 homologue protein. 37 0.082
AK131299-1|BAD18467.1| 340|Homo sapiens protein ( Homo sapiens ... 37 0.082
BT007339-1|AAP36003.1| 134|Homo sapiens RAD51 homolog C (S. cer... 36 0.11
BC101485-1|AAI01486.1| 134|Homo sapiens RAD51C protein protein. 36 0.11
BC093930-1|AAH93930.1| 134|Homo sapiens RAD51C protein protein. 36 0.11
BC000667-1|AAH00667.1| 134|Homo sapiens RAD51C protein protein. 36 0.11
AF029670-1|AAC39605.1| 135|Homo sapiens Rad51C truncated protei... 36 0.11
BC035658-1|AAH35658.1| 165|Homo sapiens DMC1 protein protein. 35 0.25
AB018363-1|BAA33782.1| 85|Homo sapiens TRAD-d7 protein. 34 0.58
AB018362-1|BAA33781.1| 85|Homo sapiens TRAD-d6 protein. 34 0.58
AB018361-1|BAA33780.1| 68|Homo sapiens TRAD-d5 protein. 34 0.58
AB016225-1|BAA31749.1| 216|Homo sapiens TRAD-d3 protein. 31 3.1
AB016224-1|BAA31748.1| 49|Homo sapiens TRAD-d2 protein. 31 4.1
AB016223-1|BAA31747.1| 49|Homo sapiens TRAD-d1 protein. 31 4.1
Y08837-1|CAA70065.1| 280|Homo sapiens XRCC2 protein. 30 9.4
BC042137-1|AAH42137.1| 280|Homo sapiens X-ray repair complement... 30 9.4
AF520762-1|AAM55241.1| 280|Homo sapiens X-ray repair complement... 30 9.4
AF035587-1|AAC05369.1| 280|Homo sapiens X-ray repair cross-comp... 30 9.4
AC003109-1|AAC05802.1| 280|Homo sapiens Xrcc2 protein. 30 9.4
>AB013341-1|BAA25914.1| 328|Homo sapiens Trad protein.
Length = 328
Score = 107 bits (258), Expect = 3e-23
Identities = 52/175 (29%), Positives = 105/175 (60%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
LT+ +I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+
Sbjct: 12 LTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADL 71
Query: 72 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT 131
++++ T + +G+ +LD +L+ G+ +TE+ G GSGKTQ+ L +A N A +
Sbjct: 72 YEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQN 131
Query: 132 VLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLK 186
VLY+D+ G +A R+ ++L+ +E A + RI + + + + +++++ + L+
Sbjct: 132 VLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALQRIQVVHAFDIFQMLDVLQELR 186
>Y15572-1|CAA75681.1| 328|Homo sapiens R51H3 protein.
Length = 328
Score = 107 bits (257), Expect = 4e-23
Identities = 52/175 (29%), Positives = 105/175 (60%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
LT+ +I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+
Sbjct: 12 LTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADL 71
Query: 72 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT 131
++++ T + +G+ +LD +L+ G+ +TE+ G GSGKTQ+ L +A N A +
Sbjct: 72 YEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQN 131
Query: 132 VLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLK 186
VLY+D+ G +A R+ ++L+ +E A + RI + + + + +++++ + L+
Sbjct: 132 VLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELR 186
>BC014422-1|AAH14422.1| 328|Homo sapiens RAD51-like 3 (S.
cerevisiae) protein.
Length = 328
Score = 107 bits (257), Expect = 4e-23
Identities = 52/175 (29%), Positives = 105/175 (60%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
LT+ +I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+
Sbjct: 12 LTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADL 71
Query: 72 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT 131
++++ T + +G+ +LD +L+ G+ +TE+ G GSGKTQ+ L +A N A +
Sbjct: 72 YEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQN 131
Query: 132 VLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLK 186
VLY+D+ G +A R+ ++L+ +E A + RI + + + + +++++ + L+
Sbjct: 132 VLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELR 186
>AY623116-1|AAT38112.1| 328|Homo sapiens RAD51-like 3 (S.
cerevisiae) protein.
Length = 328
Score = 107 bits (257), Expect = 4e-23
Identities = 52/175 (29%), Positives = 105/175 (60%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
LT+ +I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+
Sbjct: 12 LTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADL 71
Query: 72 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT 131
++++ T + +G+ +LD +L+ G+ +TE+ G GSGKTQ+ L +A N A +
Sbjct: 72 YEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQN 131
Query: 132 VLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLK 186
VLY+D+ G +A R+ ++L+ +E A + RI + + + + +++++ + L+
Sbjct: 132 VLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELR 186
>AF034956-1|AAC39719.1| 289|Homo sapiens RAD51D protein.
Length = 289
Score = 63.7 bits (148), Expect = 6e-10
Identities = 31/100 (31%), Positives = 59/100 (59%)
Query: 87 KNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRI 146
K LD +L+ G+ +TE+ G GSGKTQ+ L +A N A + VLY+D+ G +A R+
Sbjct: 48 KXLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRL 107
Query: 147 QKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLK 186
++L+ +E A + RI + + + + +++++ + L+
Sbjct: 108 LQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELR 147
Score = 31.1 bits (67), Expect = 4.1
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLS 46
LT+ +I++L RI T++D + D+E+++ C LS
Sbjct: 12 LTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLS 46
>AB018360-1|BAA33779.1| 95|Homo sapiens TRAD-d4 protein.
Length = 95
Score = 59.3 bits (137), Expect = 1e-08
Identities = 27/81 (33%), Positives = 50/81 (61%)
Query: 35 DVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLN 94
D+E+++ C LS ++ R +L +FSA +NG+ ++++ T + +G+ +LD +L+
Sbjct: 2 DLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTSTAILSTGIGSLDKLLD 61
Query: 95 RGIPAKTITELCGIAGSGKTQ 115
G+ +TE+ G GSGKTQ
Sbjct: 62 AGLYTGEVTEIVGGPGSGKTQ 82
>Y15571-1|CAA75680.1| 350|Homo sapiens R51H2 protein.
Length = 350
Score = 51.2 bits (117), Expect = 4e-06
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 13/187 (6%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
L+ + L + +I+T DFL +L + LS + E + ++ AP + +
Sbjct: 11 LSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMV-SRACAPKMQTAYG 69
Query: 72 IDKIRKGTIS---IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET 128
I R S + + + LD L+ G+ ++TE+ G G GKTQ + ++I T
Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPT 129
Query: 129 HK-----TVLYIDTKGDFSALRIQKILEK--CQYSFKEVAAIM--SRIHISYIWTMEELV 179
+ V+YIDT+ FSA R+ +I E +Y E ++ S++H+ T +E++
Sbjct: 130 NMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVL 189
Query: 180 NLFKNLK 186
++L+
Sbjct: 190 QRIESLE 196
>U92074-1|AAB63358.1| 350|Homo sapiens RecA-like protein protein.
Length = 350
Score = 51.2 bits (117), Expect = 4e-06
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 13/187 (6%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
L+ + L + +I+T DFL +L + LS + E + ++ AP + +
Sbjct: 11 LSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMV-SRACAPKMQTAYG 69
Query: 72 IDKIRKGTIS---IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET 128
I R S + + + LD L+ G+ ++TE+ G G GKTQ + ++I T
Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPT 129
Query: 129 HK-----TVLYIDTKGDFSALRIQKILEK--CQYSFKEVAAIM--SRIHISYIWTMEELV 179
+ V+YIDT+ FSA R+ +I E +Y E ++ S++H+ T +E++
Sbjct: 130 NMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVL 189
Query: 180 NLFKNLK 186
++L+
Sbjct: 190 QRIESLE 196
>U84138-1|AAC39723.1| 350|Homo sapiens DNA repair protein RAD51B
protein.
Length = 350
Score = 51.2 bits (117), Expect = 4e-06
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 13/187 (6%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
L+ + L + +I+T DFL +L + LS + E + ++ AP + +
Sbjct: 11 LSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMV-SRACAPKMQTAYG 69
Query: 72 IDKIRKGTIS---IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET 128
I R S + + + LD L+ G+ ++TE+ G G GKTQ + ++I T
Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPT 129
Query: 129 HK-----TVLYIDTKGDFSALRIQKILEK--CQYSFKEVAAIM--SRIHISYIWTMEELV 179
+ V+YIDT+ FSA R+ +I E +Y E ++ S++H+ T +E++
Sbjct: 130 NMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVL 189
Query: 180 NLFKNLK 186
++L+
Sbjct: 190 QRIESLE 196
>DQ160197-1|AAZ85144.1| 350|Homo sapiens RAD51-like 1 (S.
cerevisiae) protein.
Length = 350
Score = 51.2 bits (117), Expect = 4e-06
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 13/187 (6%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
L+ + L + +I+T DFL +L + LS + E + ++ AP + +
Sbjct: 11 LSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMV-SRACAPKMQTAYG 69
Query: 72 IDKIRKGTIS---IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET 128
I R S + + + LD L+ G+ ++TE+ G G GKTQ + ++I T
Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPT 129
Query: 129 HK-----TVLYIDTKGDFSALRIQKILEK--CQYSFKEVAAIM--SRIHISYIWTMEELV 179
+ V+YIDT+ FSA R+ +I E +Y E ++ S++H+ T +E++
Sbjct: 130 NMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVL 189
Query: 180 NLFKNLK 186
++L+
Sbjct: 190 QRIESLE 196
>CR536560-1|CAG38797.1| 350|Homo sapiens RAD51L1 protein.
Length = 350
Score = 51.2 bits (117), Expect = 4e-06
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 13/187 (6%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
L+ + L + +I+T DFL +L + LS + E + ++ AP + +
Sbjct: 11 LSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMV-SRACAPKMQTAYG 69
Query: 72 IDKIRKGTIS---IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET 128
I R S + + + LD L+ G+ ++TE+ G G GKTQ + ++I T
Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPT 129
Query: 129 HK-----TVLYIDTKGDFSALRIQKILEK--CQYSFKEVAAIM--SRIHISYIWTMEELV 179
+ V+YIDT+ FSA R+ +I E +Y E ++ S++H+ T +E++
Sbjct: 130 NMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVL 189
Query: 180 NLFKNLK 186
++L+
Sbjct: 190 QRIESLE 196
>BC030219-1|AAH30219.1| 384|Homo sapiens RAD51-like 1 (S.
cerevisiae) protein.
Length = 384
Score = 51.2 bits (117), Expect = 4e-06
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 13/187 (6%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
L+ + L + +I+T DFL +L + LS + E + ++ AP + +
Sbjct: 11 LSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMV-SRACAPKMQTAYG 69
Query: 72 IDKIRKGTIS---IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET 128
I R S + + + LD L+ G+ ++TE+ G G GKTQ + ++I T
Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPT 129
Query: 129 HK-----TVLYIDTKGDFSALRIQKILEK--CQYSFKEVAAIM--SRIHISYIWTMEELV 179
+ V+YIDT+ FSA R+ +I E +Y E ++ S++H+ T +E++
Sbjct: 130 NMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVL 189
Query: 180 NLFKNLK 186
++L+
Sbjct: 190 QRIESLE 196
>BT019705-1|AAV38511.1| 339|Homo sapiens RAD51 homolog (RecA
homolog, E. coli) (S. cerevisiae) protein.
Length = 339
Score = 50.8 bits (116), Expect = 5e-06
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC-----AKETHK 130
R I I +G K LD +L GI +ITE+ G +GKTQ+ +A+ C E
Sbjct: 96 RSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGEGEG 155
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
+YIDT+G F R+ + E+ S +V
Sbjct: 156 KAMYIDTEGTFRPERLLAVAERYGLSGSDV 185
>BC107753-1|AAI07754.1| 376|Homo sapiens RAD51 homolog C (S.
cerevisiae) protein.
Length = 376
Score = 50.8 bits (116), Expect = 5e-06
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN-----CAKETHKTVLYIDTKGDFSA 143
LD++L G+P TE+CG G GKTQL +Q+A++ C ++IDT+G F
Sbjct: 107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMV 166
Query: 144 LRIQKILEKC 153
R+ + C
Sbjct: 167 DRVVDLATAC 176
>AY623112-1|AAT38108.1| 376|Homo sapiens RAD51 homolog C (S.
cerevisiae) protein.
Length = 376
Score = 50.8 bits (116), Expect = 5e-06
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN-----CAKETHKTVLYIDTKGDFSA 143
LD++L G+P TE+CG G GKTQL +Q+A++ C ++IDT+G F
Sbjct: 107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMV 166
Query: 144 LRIQKILEKC 153
R+ + C
Sbjct: 167 DRVVDLATAC 176
>AF029669-1|AAC39604.1| 376|Homo sapiens Rad51C protein.
Length = 376
Score = 50.8 bits (116), Expect = 5e-06
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN-----CAKETHKTVLYIDTKGDFSA 143
LD++L G+P TE+CG G GKTQL +Q+A++ C ++IDT+G F
Sbjct: 107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMV 166
Query: 144 LRIQKILEKC 153
R+ + C
Sbjct: 167 DRVVDLATAC 176
>D14134-1|BAA03189.1| 339|Homo sapiens RAD51 protein.
Length = 339
Score = 50.0 bits (114), Expect = 8e-06
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK----- 130
R I I +G K LD +L GI +ITE+ G +GKTQ+ +A+ C +
Sbjct: 96 RSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG 155
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
+YIDT+G F R+ + E+ S +V
Sbjct: 156 KAMYIDTEGTFRPERLLAVAERYGLSGSDV 185
>D13804-1|BAA02962.1| 339|Homo sapiens HsRad51 protein.
Length = 339
Score = 50.0 bits (114), Expect = 8e-06
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK----- 130
R I I +G K LD +L GI +ITE+ G +GKTQ+ +A+ C +
Sbjct: 96 RSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG 155
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
+YIDT+G F R+ + E+ S +V
Sbjct: 156 KAMYIDTEGTFRPERLLAVAERYGLSGSDV 185
>CR536559-1|CAG38796.1| 339|Homo sapiens RAD51 protein.
Length = 339
Score = 50.0 bits (114), Expect = 8e-06
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK----- 130
R I I +G K LD +L GI +ITE+ G +GKTQ+ +A+ C +
Sbjct: 96 RSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG 155
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
+YIDT+G F R+ + E+ S +V
Sbjct: 156 KAMYIDTEGTFRPERLLAVAERYGLSGSDV 185
>AY196785-1|AAN87149.1| 339|Homo sapiens RAD51 homolog (RecA
homolog, E. coli) (S. cerevisiae) protein.
Length = 339
Score = 50.0 bits (114), Expect = 8e-06
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK----- 130
R I I +G K LD +L GI +ITE+ G +GKTQ+ +A+ C +
Sbjct: 96 RSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG 155
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
+YIDT+G F R+ + E+ S +V
Sbjct: 156 KAMYIDTEGTFRPERLLAVAERYGLSGSDV 185
>AF233744-1|AAF69145.1| 339|Homo sapiens RAD51 protein.
Length = 339
Score = 50.0 bits (114), Expect = 8e-06
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK----- 130
R I I +G K LD +L GI +ITE+ G +GKTQ+ +A+ C +
Sbjct: 96 RSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG 155
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
+YIDT+G F R+ + E+ S +V
Sbjct: 156 KAMYIDTEGTFRPERLLAVAERYGLSGSDV 185
>AF165094-1|AAD49705.1| 339|Homo sapiens Rad51 protein.
Length = 339
Score = 50.0 bits (114), Expect = 8e-06
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK----- 130
R I I +G K LD +L GI +ITE+ G +GKTQ+ +A+ C +
Sbjct: 96 RSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG 155
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
+YIDT+G F R+ + E+ S +V
Sbjct: 156 KAMYIDTEGTFRPERLLAVAERYGLSGSDV 185
>BT007417-1|AAP36085.1| 346|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 3 protein.
Length = 346
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 85 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ--IAINCAKE---THKTVLYIDTKG 139
G LD +L G+P ITEL G + +GKTQLALQ +A+ ++ +YI T+
Sbjct: 85 GCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTED 144
Query: 140 DFSALRIQKIL 150
F R+Q+++
Sbjct: 145 AFPHKRLQQLM 155
>BC011725-1|AAH11725.1| 346|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 3 protein.
Length = 346
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 85 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ--IAINCAKE---THKTVLYIDTKG 139
G LD +L G+P ITEL G + +GKTQLALQ +A+ ++ +YI T+
Sbjct: 85 GCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTED 144
Query: 140 DFSALRIQKIL 150
F R+Q+++
Sbjct: 145 AFPHKRLQQLM 155
>BC001036-1|AAH01036.1| 346|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 3 protein.
Length = 346
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 85 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ--IAINCAKE---THKTVLYIDTKG 139
G LD +L G+P ITEL G + +GKTQLALQ +A+ ++ +YI T+
Sbjct: 85 GCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTED 144
Query: 140 DFSALRIQKIL 150
F R+Q+++
Sbjct: 145 AFPHKRLQQLM 155
>AF508041-1|AAM23015.1| 346|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 3 protein.
Length = 346
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 85 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ--IAINCAKE---THKTVLYIDTKG 139
G LD +L G+P ITEL G + +GKTQLALQ +A+ ++ +YI T+
Sbjct: 85 GCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTED 144
Query: 140 DFSALRIQKIL 150
F R+Q+++
Sbjct: 145 AFPHKRLQQLM 155
>AF037222-1|AAC04805.1| 346|Homo sapiens XRCC3 protein.
Length = 346
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 85 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ--IAINCAKE---THKTVLYIDTKG 139
G LD +L G+P ITEL G + +GKTQLALQ +A+ ++ +YI T+
Sbjct: 85 GCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTED 144
Query: 140 DFSALRIQKIL 150
F R+Q+++
Sbjct: 145 AFPHKRLQQLM 155
>AF035586-1|AAC05368.1| 346|Homo sapiens X-ray repair
cross-complementing protein 3 protein.
Length = 346
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 85 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ--IAINCAKE---THKTVLYIDTKG 139
G LD +L G+P ITEL G + +GKTQLALQ +A+ ++ +YI T+
Sbjct: 85 GCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTED 144
Query: 140 DFSALRIQKIL 150
F R+Q+++
Sbjct: 145 AFPHKRLQQLM 155
>D63882-1|BAA09932.1| 340|Homo sapiens HsLim15 protein.
Length = 340
Score = 38.3 bits (85), Expect = 0.027
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 17 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 73
IK L I TI L N+ LS + +I EA N+++ P +
Sbjct: 37 IKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS 92
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCAKET 128
+ RK I +G + D +L GI + ITE G +GKTQL+ + +
Sbjct: 93 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 152
Query: 129 HKTVLYIDTKGDFSALRIQKILEK 152
+++IDT+ F R++ I ++
Sbjct: 153 GGKIIFIDTENTFRPDRLRDIADR 176
>CR456486-1|CAG30372.1| 340|Homo sapiens DMC1 protein.
Length = 340
Score = 38.3 bits (85), Expect = 0.027
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 17 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 73
IK L I TI L N+ LS + +I EA N+++ P +
Sbjct: 37 IKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS 92
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCAKET 128
+ RK I +G + D +L GI + ITE G +GKTQL+ + +
Sbjct: 93 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 152
Query: 129 HKTVLYIDTKGDFSALRIQKILEK 152
+++IDT+ F R++ I ++
Sbjct: 153 GGKIIFIDTENTFRPDRLRDIADR 176
>BC125164-1|AAI25165.1| 340|Homo sapiens DMC1 dosage suppressor of
mck1 homolog, meiosis-specific homologous recombinati
protein.
Length = 340
Score = 38.3 bits (85), Expect = 0.027
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 17 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 73
IK L I TI L N+ LS + +I EA N+++ P +
Sbjct: 37 IKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS 92
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCAKET 128
+ RK I +G + D +L GI + ITE G +GKTQL+ + +
Sbjct: 93 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 152
Query: 129 HKTVLYIDTKGDFSALRIQKILEK 152
+++IDT+ F R++ I ++
Sbjct: 153 GGKIIFIDTENTFRPDRLRDIADR 176
>BC125163-1|AAI25164.1| 340|Homo sapiens DMC1 dosage suppressor of
mck1 homolog, meiosis-specific homologous recombinati
protein.
Length = 340
Score = 38.3 bits (85), Expect = 0.027
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 17 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 73
IK L I TI L N+ LS + +I EA N+++ P +
Sbjct: 37 IKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS 92
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCAKET 128
+ RK I +G + D +L GI + ITE G +GKTQL+ + +
Sbjct: 93 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 152
Query: 129 HKTVLYIDTKGDFSALRIQKILEK 152
+++IDT+ F R++ I ++
Sbjct: 153 GGKIIFIDTENTFRPDRLRDIADR 176
>AY520538-1|AAR89915.1| 340|Homo sapiens DMC1 dosage suppressor of
mck1 homolog, meiosis-specific homologous recombinati
protein.
Length = 340
Score = 38.3 bits (85), Expect = 0.027
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 17 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 73
IK L I TI L N+ LS + +I EA N+++ P +
Sbjct: 37 IKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS 92
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCAKET 128
+ RK I +G + D +L GI + ITE G +GKTQL+ + +
Sbjct: 93 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 152
Query: 129 HKTVLYIDTKGDFSALRIQKILEK 152
+++IDT+ F R++ I ++
Sbjct: 153 GGKIIFIDTENTFRPDRLRDIADR 176
>AL022320-2|CAB45656.1| 340|Homo sapiens DMC1 dosage suppressor of
mck1 homolog, meiosis-specific homologous recombinati
protein.
Length = 340
Score = 38.3 bits (85), Expect = 0.027
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 17 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 73
IK L I TI L N+ LS + +I EA N+++ P +
Sbjct: 37 IKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS 92
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCAKET 128
+ RK I +G + D +L GI + ITE G +GKTQL+ + +
Sbjct: 93 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 152
Query: 129 HKTVLYIDTKGDFSALRIQKILEK 152
+++IDT+ F R++ I ++
Sbjct: 153 GGKIIFIDTENTFRPDRLRDIADR 176
>D64108-1|BAA10970.1| 340|Homo sapiens DMC1 homologue protein.
Length = 340
Score = 36.7 bits (81), Expect = 0.082
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 39 LSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIP 98
+ + + + +I EA N+++ P + + RK I +G + D +L GI
Sbjct: 62 VKGLSEAKVDKIKEAANKLIE----PGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIE 117
Query: 99 AKTITELCGIAGSGKTQLALQIAI-----NCAKETHKTVLYIDTKGDFSALRIQKILEK 152
+ ITE G +GKTQL+ + + +++IDT+ F R++ I ++
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 176
>AK131299-1|BAD18467.1| 340|Homo sapiens protein ( Homo sapiens
cDNA FLJ16262 fis, clone IMR322008651, highly similar
to DNA REPAIR PROTEIN RAD51. ).
Length = 340
Score = 36.7 bits (81), Expect = 0.082
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 96 GIPAKTITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKIL 150
GI +ITE+ G +GKTQ+ +A+ C + +YIDT+G F R+ +
Sbjct: 117 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 176
Query: 151 EKCQYSFKEV 160
E+ S +V
Sbjct: 177 ERYGLSGSDV 186
>BT007339-1|AAP36003.1| 134|Homo sapiens RAD51 homolog C (S.
cerevisiae) protein.
Length = 134
Score = 36.3 bits (80), Expect = 0.11
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQL 116
LD++L G+P TE+CG G GKTQL
Sbjct: 107 LDDILGGGVPLMKTTEICGAPGVGKTQL 134
>BC101485-1|AAI01486.1| 134|Homo sapiens RAD51C protein protein.
Length = 134
Score = 36.3 bits (80), Expect = 0.11
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQL 116
LD++L G+P TE+CG G GKTQL
Sbjct: 107 LDDILGGGVPLMKTTEICGAPGVGKTQL 134
>BC093930-1|AAH93930.1| 134|Homo sapiens RAD51C protein protein.
Length = 134
Score = 36.3 bits (80), Expect = 0.11
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQL 116
LD++L G+P TE+CG G GKTQL
Sbjct: 107 LDDILGGGVPLMKTTEICGAPGVGKTQL 134
>BC000667-1|AAH00667.1| 134|Homo sapiens RAD51C protein protein.
Length = 134
Score = 36.3 bits (80), Expect = 0.11
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQL 116
LD++L G+P TE+CG G GKTQL
Sbjct: 107 LDDILGGGVPLMKTTEICGAPGVGKTQL 134
>AF029670-1|AAC39605.1| 135|Homo sapiens Rad51C truncated protein
protein.
Length = 135
Score = 36.3 bits (80), Expect = 0.11
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQL 116
LD++L G+P TE+CG G GKTQL
Sbjct: 107 LDDILGGGVPLMKTTEICGAPGVGKTQL 134
>BC035658-1|AAH35658.1| 165|Homo sapiens DMC1 protein protein.
Length = 165
Score = 35.1 bits (77), Expect = 0.25
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 17 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 73
IK L I TI L N+ LS + +I EA N+++ P +
Sbjct: 37 IKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS 92
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI 122
+ RK I +G + D +L GI + ITE G +GKTQL+ + +
Sbjct: 93 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 141
>AB018363-1|BAA33782.1| 85|Homo sapiens TRAD-d7 protein.
Length = 85
Score = 33.9 bits (74), Expect = 0.58
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 35 DVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGV 86
D+E+++ C LS ++ R +L +FSA +NG+ ++++ T + +G+
Sbjct: 2 DLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTSTAILSTGI 53
>AB018362-1|BAA33781.1| 85|Homo sapiens TRAD-d6 protein.
Length = 85
Score = 33.9 bits (74), Expect = 0.58
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 35 DVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGV 86
D+E+++ C LS ++ R +L +FSA +NG+ ++++ T + +G+
Sbjct: 2 DLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTSTAILSTGI 53
>AB018361-1|BAA33780.1| 68|Homo sapiens TRAD-d5 protein.
Length = 68
Score = 33.9 bits (74), Expect = 0.58
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 35 DVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGV 86
D+E+++ C LS ++ R +L +FSA +NG+ ++++ T + +G+
Sbjct: 2 DLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTSTAILSTGI 53
>AB016225-1|BAA31749.1| 216|Homo sapiens TRAD-d3 protein.
Length = 216
Score = 31.5 bits (68), Expect = 3.1
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 71
LT+ +I++L RI T++D + D+E+++ C LS EA RI + +
Sbjct: 12 LTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYK--AEALRRIQVVHAFDIFQMLDV 69
Query: 72 IDKIRKGTIS 81
+ ++R GT++
Sbjct: 70 LQELR-GTVA 78
>AB016224-1|BAA31748.1| 49|Homo sapiens TRAD-d2 protein.
Length = 49
Score = 31.1 bits (67), Expect = 4.1
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLS 46
LT+ +I++L RI T++D + D+E+++ C LS
Sbjct: 12 LTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLS 46
>AB016223-1|BAA31747.1| 49|Homo sapiens TRAD-d1 protein.
Length = 49
Score = 31.1 bits (67), Expect = 4.1
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 12 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLS 46
LT+ +I++L RI T++D + D+E+++ C LS
Sbjct: 12 LTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLS 46
>Y08837-1|CAA70065.1| 280|Homo sapiens XRCC2 protein.
Length = 280
Score = 29.9 bits (64), Expect = 9.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 102 ITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKILE 151
I E G G+GKT++ + C + VL+IDT F LR+ ILE
Sbjct: 43 ILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE 97
>BC042137-1|AAH42137.1| 280|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 2 protein.
Length = 280
Score = 29.9 bits (64), Expect = 9.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 102 ITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKILE 151
I E G G+GKT++ + C + VL+IDT F LR+ ILE
Sbjct: 43 ILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE 97
>AF520762-1|AAM55241.1| 280|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 2 protein.
Length = 280
Score = 29.9 bits (64), Expect = 9.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 102 ITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKILE 151
I E G G+GKT++ + C + VL+IDT F LR+ ILE
Sbjct: 43 ILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE 97
>AF035587-1|AAC05369.1| 280|Homo sapiens X-ray repair
cross-complementing protein 2 protein.
Length = 280
Score = 29.9 bits (64), Expect = 9.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 102 ITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKILE 151
I E G G+GKT++ + C + VL+IDT F LR+ ILE
Sbjct: 43 ILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE 97
>AC003109-1|AAC05802.1| 280|Homo sapiens Xrcc2 protein.
Length = 280
Score = 29.9 bits (64), Expect = 9.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 102 ITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKILE 151
I E G G+GKT++ + C + VL+IDT F LR+ ILE
Sbjct: 43 ILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE 97
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.323 0.136 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,707,217
Number of Sequences: 224733
Number of extensions: 1098177
Number of successful extensions: 2256
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2185
Number of HSP's gapped (non-prelim): 54
length of query: 262
length of database: 73,234,838
effective HSP length: 89
effective length of query: 173
effective length of database: 53,233,601
effective search space: 9209412973
effective search space used: 9209412973
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 64 (29.9 bits)
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