Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002778-TA|BGIBMGA002778-PA|IPR001553|RecA bacterial DNA
recombination
(262 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L41342-1|AAA64873.1| 336|Drosophila melanogaster protein ( Dros... 54 3e-07
D37788-1|BAA07039.1| 336|Drosophila melanogaster RecA protein h... 54 3e-07
D17726-1|BAA04580.1| 336|Drosophila melanogaster Rad51 protein. 54 3e-07
AE014297-4532|AAF57005.1| 336|Drosophila melanogaster CG7948-PA... 54 3e-07
AE013599-813|AAF58973.1| 184|Drosophila melanogaster CG2412-PA ... 51 1e-06
AF069531-1|AAC42663.1| 341|Drosophila melanogaster spindle B pr... 51 2e-06
AE014297-1844|AAF55050.1| 341|Drosophila melanogaster CG3325-PA... 51 2e-06
AY070920-1|AAL48542.1| 341|Drosophila melanogaster RE02671p pro... 50 4e-06
BT001791-1|AAN71546.1| 284|Drosophila melanogaster RH24133p pro... 49 6e-06
AE014297-4533|AAN14213.1| 279|Drosophila melanogaster CG7948-PB... 49 6e-06
AY257540-1|AAP13056.1| 270|Drosophila melanogaster spindle D pr... 48 2e-05
AY071162-1|AAL48784.1| 270|Drosophila melanogaster RE19845p pro... 48 2e-05
AE014297-4083|AAN14399.1| 270|Drosophila melanogaster CG31069-P... 48 2e-05
>L41342-1|AAA64873.1| 336|Drosophila melanogaster protein (
Drosophila melanogaster(clone pDmR2210) RAD51 homolog
gene, complete cds. ).
Length = 336
Score = 53.6 bits (123), Expect = 3e-07
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 4 LTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTK 60
+T + G ++T IK+L Q+ + T+ ++L I L + QI+ N+++
Sbjct: 22 VTKLIGGSITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVP- 80
Query: 61 FSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 120
++ F ++R + + +G K LD +L GI +ITE+ G GKTQL +
Sbjct: 81 --LGFLSARTFY-QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTL 137
Query: 121 AINC-----AKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
A+ C K +YIDT+ F R+ I ++ + + EV
Sbjct: 138 AVTCQLPISQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNESEV 182
>D37788-1|BAA07039.1| 336|Drosophila melanogaster RecA protein
homologue protein.
Length = 336
Score = 53.6 bits (123), Expect = 3e-07
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 4 LTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTK 60
+T + G ++T IK+L Q+ + T+ ++L I L + QI+ N+++
Sbjct: 22 VTKLIGGSITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVP- 80
Query: 61 FSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 120
++ F ++R + + +G K LD +L GI +ITE+ G GKTQL +
Sbjct: 81 --LGFLSARTFY-QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTL 137
Query: 121 AINC-----AKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
A+ C K +YIDT+ F R+ I ++ + + EV
Sbjct: 138 AVTCQLPISQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNESEV 182
>D17726-1|BAA04580.1| 336|Drosophila melanogaster Rad51 protein.
Length = 336
Score = 53.6 bits (123), Expect = 3e-07
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 4 LTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTK 60
+T + G ++T IK+L Q+ + T+ ++L I L + QI+ N+++
Sbjct: 22 VTKLIGGSITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVP- 80
Query: 61 FSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 120
++ F ++R + + +G K LD +L GI +ITE+ G GKTQL +
Sbjct: 81 --LGFLSARTFY-QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTL 137
Query: 121 AINC-----AKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
A+ C K +YIDT+ F R+ I ++ + + EV
Sbjct: 138 AVTCQLPISQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNESEV 182
>AE014297-4532|AAF57005.1| 336|Drosophila melanogaster CG7948-PA,
isoform A protein.
Length = 336
Score = 53.6 bits (123), Expect = 3e-07
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 4 LTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTK 60
+T + G ++T IK+L Q+ + T+ ++L I L + QI+ N+++
Sbjct: 22 VTKLIGGSITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVP- 80
Query: 61 FSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 120
++ F ++R + + +G K LD +L GI +ITE+ G GKTQL +
Sbjct: 81 --LGFLSARTFY-QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTL 137
Query: 121 AINC-----AKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
A+ C K +YIDT+ F R+ I ++ + + EV
Sbjct: 138 AVTCQLPISQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNESEV 182
>AE013599-813|AAF58973.1| 184|Drosophila melanogaster CG2412-PA
protein.
Length = 184
Score = 51.2 bits (117), Expect = 1e-06
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 102 ITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEVA 161
+ ELCG G GKTQL +A+N + + VL+IDTK +FS RIQ +L + +
Sbjct: 23 VWELCGQPGVGKTQLLYTLALNFVWKHSQAVLFIDTKREFSCKRIQDMLRAREVDEEASE 82
Query: 162 AIMSRIHISYIWTMEELVNLFKN 184
M I + T ++ +L K+
Sbjct: 83 RAMKGIRVVQAATGADINDLLKS 105
>AF069531-1|AAC42663.1| 341|Drosophila melanogaster spindle B
protein.
Length = 341
Score = 50.8 bits (116), Expect = 2e-06
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 31 FLQEDVEKLSNICKLSIPQILEARNRILTKFSA--PVINGSCFIDKIRKGTISIKSGVKN 88
FL + L I + P + K+ A P S F + + G
Sbjct: 35 FLDTRQQSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVSFGCSA 94
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIA--INCAKE---THKTVLYIDTKGDFSA 143
LD G+ + ITELCG AG GKTQL LQ++ + +E K V YI T+ F A
Sbjct: 95 LDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFPA 154
Query: 144 LRIQKILEKCQYSFKEV 160
R+ ++ + C+ E+
Sbjct: 155 RRLLQMSKACEKRHPEM 171
>AE014297-1844|AAF55050.1| 341|Drosophila melanogaster CG3325-PA
protein.
Length = 341
Score = 50.8 bits (116), Expect = 2e-06
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 31 FLQEDVEKLSNICKLSIPQILEARNRILTKFSA--PVINGSCFIDKIRKGTISIKSGVKN 88
FL + L I + P + K+ A P S F + + G
Sbjct: 35 FLDTRQQSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVSFGCSA 94
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIA--INCAKE---THKTVLYIDTKGDFSA 143
LD G+ + ITELCG AG GKTQL LQ++ + +E K V YI T+ F A
Sbjct: 95 LDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFPA 154
Query: 144 LRIQKILEKCQYSFKEV 160
R+ ++ + C+ E+
Sbjct: 155 RRLLQMSKACEKRHPEM 171
>AY070920-1|AAL48542.1| 341|Drosophila melanogaster RE02671p
protein.
Length = 341
Score = 49.6 bits (113), Expect = 4e-06
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 31 FLQEDVEKLSNICKLSIPQILEARNRILTKFSA--PVINGSCFIDKIRKGTISIKSGVKN 88
FL + L I + P + K+ A P S F + + G
Sbjct: 35 FLDTRQQSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVSFGCSA 94
Query: 89 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIA--INCAKE---THKTVLYIDTKGDFSA 143
LD G+ + ITELCG AG GKT+L LQ++ + +E K V YI T+ F A
Sbjct: 95 LDRCTGGGVVTRGITELCGAAGVGKTELLLQLSLCVQLPRELGGLGKGVAYICTESSFPA 154
Query: 144 LRIQKILEKCQYSFKEV 160
R+ ++ + C+ E+
Sbjct: 155 RRLLQMSKACEKRHPEM 171
>BT001791-1|AAN71546.1| 284|Drosophila melanogaster RH24133p
protein.
Length = 284
Score = 49.2 bits (112), Expect = 6e-06
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC-----AKET 128
++R + + +G K LD +L GI +ITE+ G GKTQL +A+ C K
Sbjct: 34 QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGG 93
Query: 129 HKTVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
+YIDT+ F R+ I ++ + + EV
Sbjct: 94 EGKCMYIDTENTFRPERLAAIAQRYKLNESEV 125
>AE014297-4533|AAN14213.1| 279|Drosophila melanogaster CG7948-PB,
isoform B protein.
Length = 279
Score = 49.2 bits (112), Expect = 6e-06
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 74 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC-----AKET 128
++R + + +G K LD +L GI +ITE+ G GKTQL +A+ C K
Sbjct: 34 QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGG 93
Query: 129 HKTVLYIDTKGDFSALRIQKILEKCQYSFKEV 160
+YIDT+ F R+ I ++ + + EV
Sbjct: 94 EGKCMYIDTENTFRPERLAAIAQRYKLNESEV 125
>AY257540-1|AAP13056.1| 270|Drosophila melanogaster spindle D
protein.
Length = 270
Score = 47.6 bits (108), Expect = 2e-05
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 46 SIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITEL 105
S P+ +E R + + + + + SC+ D + + I +G K LD GI + EL
Sbjct: 12 SQPEAIERRPSVSHE-NFRIFDKSCW-DISQSASNKILTGKKALDTHFGGGISLGHLVEL 69
Query: 106 CGIAGSGKTQLALQIAIN-----CAKETHKTVLYIDTKGDFSALRIQKILEKCQYSF 157
G +G+GKTQ+ LQ+ +N A + L+IDT+ DF R+ + K + +
Sbjct: 70 IGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQY 126
>AY071162-1|AAL48784.1| 270|Drosophila melanogaster RE19845p
protein.
Length = 270
Score = 47.6 bits (108), Expect = 2e-05
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 46 SIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITEL 105
S P+ +E R + + + + + SC+ D + + I +G K LD GI + EL
Sbjct: 12 SQPEAIERRPSVSHE-NFRIFDKSCW-DISQSASNKILTGKKALDTHFGGGISLGHLVEL 69
Query: 106 CGIAGSGKTQLALQIAIN-----CAKETHKTVLYIDTKGDFSALRIQKILEKCQYSF 157
G +G+GKTQ+ LQ+ +N A + L+IDT+ DF R+ + K + +
Sbjct: 70 IGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQY 126
>AE014297-4083|AAN14399.1| 270|Drosophila melanogaster CG31069-PA
protein.
Length = 270
Score = 47.6 bits (108), Expect = 2e-05
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 46 SIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITEL 105
S P+ +E R + + + + + SC+ D + + I +G K LD GI + EL
Sbjct: 12 SQPEAIERRPSVSHE-NFRIFDKSCW-DISQSASNKILTGKKALDTHFGGGISLGHLVEL 69
Query: 106 CGIAGSGKTQLALQIAIN-----CAKETHKTVLYIDTKGDFSALRIQKILEKCQYSF 157
G +G+GKTQ+ LQ+ +N A + L+IDT+ DF R+ + K + +
Sbjct: 70 IGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQY 126
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.323 0.136 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,618,659
Number of Sequences: 52641
Number of extensions: 380479
Number of successful extensions: 828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 13
length of query: 262
length of database: 24,830,863
effective HSP length: 84
effective length of query: 178
effective length of database: 20,409,019
effective search space: 3632805382
effective search space used: 3632805382
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)
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