Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002778-TA|BGIBMGA002778-PA|IPR001553|RecA bacterial DNA
recombination
(262 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical ... 46 4e-05
AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical ... 46 4e-05
AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short i... 46 4e-05
AB011382-1|BAA24982.1| 357|Caenorhabditis elegans RecA/Rad51/Dm... 46 4e-05
S82771-1|AAC05600.1| 191|Caenorhabditis elegans cdc42 homolog p... 29 3.4
U58738-1|AAB00602.1| 290|Caenorhabditis elegans Hypothetical pr... 28 7.8
U23452-10|AAK31543.1| 191|Caenorhabditis elegans Hypothetical p... 28 7.8
L10078-1|AAA51433.1| 188|Caenorhabditis elegans guanine nucleot... 28 7.8
>AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical
protein Y43C5A.6b protein.
Length = 357
Score = 45.6 bits (103), Expect = 4e-05
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HK 130
R + I++G +LD +L GI +ITE+ G +GKTQL +A+ C
Sbjct: 112 RSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 171
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 181
+YIDT F RI I ++ Y+ + A ++ I ++ + E L+ L
Sbjct: 172 KCMYIDTNATFRPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 219
>AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical
protein Y43C5A.6a protein.
Length = 395
Score = 45.6 bits (103), Expect = 4e-05
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HK 130
R + I++G +LD +L GI +ITE+ G +GKTQL +A+ C
Sbjct: 150 RSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 209
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 181
+YIDT F RI I ++ Y+ + A ++ I ++ + E L+ L
Sbjct: 210 KCMYIDTNATFRPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 257
>AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short
isoform protein.
Length = 357
Score = 45.6 bits (103), Expect = 4e-05
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HK 130
R + I++G +LD +L GI +ITE+ G +GKTQL +A+ C
Sbjct: 112 RSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 171
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 181
+YIDT F RI I ++ Y+ + A ++ I ++ + E L+ L
Sbjct: 172 KCMYIDTNATFRPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 219
>AB011382-1|BAA24982.1| 357|Caenorhabditis elegans
RecA/Rad51/Dmc1-like protein protein.
Length = 357
Score = 45.6 bits (103), Expect = 4e-05
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 76 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HK 130
R + I++G +LD +L GI +ITE+ G +GKTQL +A+ C
Sbjct: 112 RSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 171
Query: 131 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 181
+YIDT F RI I ++ Y+ + A ++ I ++ + E L+ L
Sbjct: 172 KCMYIDTNATFRPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 219
>S82771-1|AAC05600.1| 191|Caenorhabditis elegans cdc42 homolog
protein.
Length = 191
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 1 MQKLTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNI 42
++ + +VE +ALT+ +K +F I+ LD Q++ +K NI
Sbjct: 149 LKAVKYVECSALTEKELKNVFDEAILAALDPPQQEKKKKCNI 190
>U58738-1|AAB00602.1| 290|Caenorhabditis elegans Hypothetical
protein F31A9.4 protein.
Length = 290
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 32 LQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDN 91
+ E ++ S + KL + + + I+T V N + F DKIR + + L N
Sbjct: 145 ITEIIDSTSPLEKLELDWPFDFDHPIVTSAKLLVFNIATFFDKIRNTRVHFTYSKRTLRN 204
Query: 92 MLNR 95
+++R
Sbjct: 205 LIHR 208
>U23452-10|AAK31543.1| 191|Caenorhabditis elegans Hypothetical
protein R07G3.1 protein.
Length = 191
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 1 MQKLTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNI 42
++ + +VE +ALT +K +F I+ LD Q++ +K NI
Sbjct: 149 LKAVKYVECSALTQKGLKNVFDEAILAALDPPQQEKKKKCNI 190
>L10078-1|AAA51433.1| 188|Caenorhabditis elegans guanine nucleotide
regulatory proteinprotein.
Length = 188
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 1 MQKLTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNI 42
++ + +VE +ALT +K +F I+ LD Q++ +K NI
Sbjct: 146 LKAVKYVECSALTQKGLKNVFDEAILAALDPPQQEKKKKCNI 187
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.136 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,575,591
Number of Sequences: 27539
Number of extensions: 207131
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 8
length of query: 262
length of database: 12,573,161
effective HSP length: 80
effective length of query: 182
effective length of database: 10,370,041
effective search space: 1887347462
effective search space used: 1887347462
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)
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