Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002777-TA|BGIBMGA002777-PA|undefined
(61 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.096
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 0.90
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 23 3.6
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 23 3.6
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 23 3.6
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ... 23 4.8
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 23 6.3
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 23 6.3
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 22 8.4
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 22 8.4
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar... 22 8.4
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 0.096
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 5 PPPEATLDPVSNTDDVIWEGGVNKKKLKRPGLSKNLIP--NKKVIKMYKEQKARDGKK 60
PPP +P S G V K+K K P S NL N++ K QK++ G K
Sbjct: 12 PPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNLEKQLNERARKWRASQKSKFGVK 69
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 0.90
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 2 TAAPPPEATLDPVSNTDDVIWEGGVNKKKLKRPGLSKN 39
T P PE T+ ++DD ++ G+ K K K+ S N
Sbjct: 327 TVDPIPEGTIIKKESSDDAMF-SGLKKSKPKKSNKSNN 363
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 23.4 bits (48), Expect = 3.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 5 PPPEATLDPVSNTDDVIWE 23
PPPE+T++ VSN + E
Sbjct: 463 PPPESTVEIVSNAPTLAME 481
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 23.4 bits (48), Expect = 3.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 43 NKKVIKMYKEQKARDGKKI 61
NK+VIK++K K+ D ++I
Sbjct: 433 NKQVIKLFKPTKSSDRQEI 451
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 23.4 bits (48), Expect = 3.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 16 NTDDVIWEGGVNKKKLKRPGLSKNLIPNKKVIK 48
NT+++ + K+ + LS +IPNKK IK
Sbjct: 323 NTNNLWFHLPSVKRVVNNHELSMEIIPNKKTIK 355
>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 364
Score = 23.0 bits (47), Expect = 4.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 26 VNKKKLKRPGLSKNLIPN 43
V +++ KR LSKNL PN
Sbjct: 42 VIERRSKRESLSKNLSPN 59
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 22.6 bits (46), Expect = 6.3
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 11 LDPVSNTDDVIWEGGVNKKKLKRPGLSKNLIPNKKVIKMYKEQK 54
L+ NT +++WEG + ++ + S P++ K Y E++
Sbjct: 484 LNYTENTCNLVWEGEIGRRAFRY--WSFRSCPSENDAKSYLEEQ 525
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 22.6 bits (46), Expect = 6.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 24 GGVNKKKLKRPGLSKNLIPNKKVIKMYKEQKARD 57
G + K +K+ L K +KK+ + +E +RD
Sbjct: 6 GSLKLKNVKKKPLKKKKKDSKKLAEKVQEHSSRD 39
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 22.2 bits (45), Expect = 8.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 11 LDPVSNTDDVIWEGGVNKKKLKRP 34
+D N+DDV +G + KRP
Sbjct: 87 IDDAQNSDDVRVDGTRRSSRAKRP 110
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 22.2 bits (45), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 8 EATLDPVSNTDDVIWEGGVNKKKL--KRPGLSK 38
+ T V+ TDD++ GG KL PG +K
Sbjct: 743 DMTSHRVTKTDDIVLSGGKTAIKLIPPAPGAAK 775
>SPAC19D5.06c |din1||Dhp1p-interacting protein
Din1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 22.2 bits (45), Expect = 8.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 6 PPEATLDPVSNTDDVIWEGGV 26
PP++ DP+S DV+ G+
Sbjct: 64 PPKSDPDPISIVKDVLMTKGI 84
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 326,068
Number of Sequences: 5004
Number of extensions: 10981
Number of successful extensions: 24
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 11
length of query: 61
length of database: 2,362,478
effective HSP length: 42
effective length of query: 19
effective length of database: 2,152,310
effective search space: 40893890
effective search space used: 40893890
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 45 (22.2 bits)
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