GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002777-TA|BGIBMGA002777-PA|undefined
         (61 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0542 - 7005972-7007443,7008568-7008766,7008780-7008855,700...    28   0.83 
06_03_0337 + 19678152-19678484,19678616-19678801,19679232-196794...    28   1.1  
12_01_1050 + 10798692-10798867,10798972-10799169,10799617-108006...    27   1.9  
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166...    27   2.5  
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    26   4.4  
01_06_0224 - 27672201-27672336,27672439-27672507,27672948-276730...    26   4.4  
07_01_0535 + 3952066-3952986                                           25   5.8  
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694...    25   7.7  

>04_01_0542 -
           7005972-7007443,7008568-7008766,7008780-7008855,
           7009615-7009925
          Length = 685

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 1   MTAAPPPEATLDPVSNTDDVIWEGGVNKKKLKRPGLSKN---LIPNKKVIKM 49
           + AAP P+AT + V  T         NKK+ K P L +N     PN K I +
Sbjct: 79  VAAAPAPDATENEVVATKAANETAAKNKKRGKTPPLHRNPKTYRPNTKTIHL 130


>06_03_0337 +
          19678152-19678484,19678616-19678801,19679232-19679417,
          19680840-19680926,19681045-19681086,19681164-19681253,
          19681399-19681503,19681797-19681835,19681914-19682018,
          19682463-19682531,19682587-19682736,19683156-19683335
          Length = 523

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 3  AAPPPEATLDPVSNTDDVIWEGGVNKKKLKRPGLSKNLIPNKKVIKMYKEQKARDGKK 60
          AA PPE+  +PV NT     EG  N    +R   +K +    K  K  +++K  +GKK
Sbjct: 25 AATPPESEPEPVHNTAACNSEGENNATGKRREHNNKKM----KEEKSKRKKKQGEGKK 78


>12_01_1050 +
           10798692-10798867,10798972-10799169,10799617-10800649,
           10800866-10801219
          Length = 586

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 8   EATLDPVSNTDDVIWE--GGVNKKKL---KRPGLSKNLI-PNKKVIKMYKEQKAR 56
           E  L  +SNTDD++W+    +N K+L   K    S++++ P  K+IK +     R
Sbjct: 258 ENNLRIMSNTDDLVWKIVALINDKELHLRKHDKWSRDIVDPGVKLIKRFMSATTR 312


>01_06_1691 -
           39215192-39215283,39215341-39215413,39215874-39216615,
           39216730-39217985,39218080-39218187,39218289-39218474,
           39218625-39218675
          Length = 835

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 20  VIWEGGV-NKKKLKRPGLSKNLIPNKKVIKMYKEQKARDG 58
           V+ EG V +   +   G  K    ++K++K+++EQ+ RDG
Sbjct: 713 VLQEGVVPSLVSISATGTGKGKEKSQKLLKLFREQRQRDG 752


>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 12  DPVSN-TDDVIWEGGVNKKKLKRPGLSKNLIPNKKVIKMYKEQKARDGKK 60
           D V N   + IW   V KKK K+    K     KK  K  K++K +  KK
Sbjct: 51  DDVENYQQENIWNPVVMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKK 100


>01_06_0224 -
          27672201-27672336,27672439-27672507,27672948-27673040,
          27673245-27673336,27673491-27673577,27673734-27673832,
          27673927-27674026,27674113-27674171,27674361-27674720
          Length = 364

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)

Query: 12 DPVSNTDDVIW 22
          DPV NTDD IW
Sbjct: 82 DPVGNTDDFIW 92


>07_01_0535 + 3952066-3952986
          Length = 306

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 23 EGGVNKKKLKRPGLSKNLIPNKKVIKMYKEQKA 55
          E GVNK +   PG+S+    +  +I  Y++Q A
Sbjct: 4  ECGVNKSRRFDPGMSRRTRRSTSLIVCYQDQHA 36


>02_04_0544 -
           23768808-23768910,23769005-23769030,23769379-23769497,
           23769542-23769668,23769842-23769905,23769981-23770095,
           23770867-23771101,23771196-23771382,23771948-23772305,
           23772432-23772465
          Length = 455

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 36  LSKNLIPNKKVIKMYKEQKARDG 58
           +SKN + NKK  +  KE+KA +G
Sbjct: 425 MSKNALRNKKRREKQKEKKAAEG 447


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,362
Number of Sequences: 37544
Number of extensions: 73026
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 9
length of query: 61
length of database: 14,793,348
effective HSP length: 41
effective length of query: 20
effective length of database: 13,254,044
effective search space: 265080880
effective search space used: 265080880
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 52 (25.0 bits)