GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002777-TA|BGIBMGA002777-PA|undefined
         (61 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   1e-04
SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               27   1.6  
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)                 26   5.0  
SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6)                      25   6.7  
SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               25   6.7  
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     25   6.7  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  

>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 2   TAAPPPEA-TLDPVSNTDDVIWEGGVNKKKLKRPGLSKNLIPNKKVIKMYKEQKARD 57
           TAAP     TL  + N ++  WE    K K +R G++ +L+P K+ +K Y++QK R+
Sbjct: 146 TAAPHTSVRTLRYIPNEEETQWEE--KKPKKRRVGVTDSLVPPKRAVKAYEQQKVRE 200


>SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 817

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 13  PVSNTDDVIWEGGV-NKKKLKRPGLSKNLIPNKK 45
           PVS T   + +G + +KKK+  PGL   L P++K
Sbjct: 357 PVSVTHTAVSQGSLMDKKKVPLPGLGAQLKPHEK 390


>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 2   TAAPPPEATLDPVSNTDDVIWEGGVNKKKLKRPGLSKNLIP 42
           +A PPP     P+   D  IW  G     L  P LS  L P
Sbjct: 682 SAPPPPAPPPPPIGGGDPTIWVSG--GPPLSAPPLSSTLGP 720


>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 28 KKKLKRPGLSKNLIPNKKVIKMYKEQKARDGKK 60
          KKK K+   +KN    KK +K  KE++A  G+K
Sbjct: 36 KKKNKKNKKNKNKNKKKKKMKKKKEEEAEVGEK 68


>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
          Length = 439

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 4  APPPEATLDPVSNTD 18
          APPPE T  PV++TD
Sbjct: 34 APPPEPTQAPVADTD 48


>SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6)
          Length = 420

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 29  KKLKRPGLSKNLIPNKKVIKMYKE 52
           K  +RP L+K L+     +K+YKE
Sbjct: 267 KYAQRPNLAKELMDMTNAVKLYKE 290


>SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 7  PEATLDPVSNTDDVIWEGGVNKKKLKRPGLSKNLIPNKKVIKMYKEQ 53
          P +   P SN  + +WE   N ++L R G SK  +     + +Y +Q
Sbjct: 43 PNSQAAPTSNNGEKLWERAWNLEEL-RKGTSKWTLAADAGLLLYLQQ 88


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 39  NLIPNKKVIKMYKEQKARDGKK 60
           NL+  ++ IK+ K+QK RD +K
Sbjct: 403 NLLEEEEAIKLEKQQKYRDWRK 424


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 27  NKKKLKRPGLSKNLIPNKKVIKMYKEQKARDGKK 60
           NKK  K     K   P+KK  K  KE+K+   +K
Sbjct: 610 NKKNDKEESSPKKKSPSKKASKAPKEEKSSSPRK 643


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 5    PPPEATLDPVSNTDD--VIWEGGVNKKKLKRP---GLSKNLIPNKKVIKMYKEQKARDGK 59
            P  EA    +S  +D  V  EG   KKK K+    G +K+   +KK  K  ++QK  DG 
Sbjct: 1167 PAEEAPSKALSGEEDEWVEKEGKEKKKKHKKHKKHGSAKHKKKDKKHKKQKEKQKTSDGS 1226

Query: 60   K 60
            +
Sbjct: 1227 E 1227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,659
Number of Sequences: 59808
Number of extensions: 77033
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 11
length of query: 61
length of database: 16,821,457
effective HSP length: 40
effective length of query: 21
effective length of database: 14,429,137
effective search space: 303011877
effective search space used: 303011877
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 52 (25.0 bits)