GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002777-TA|BGIBMGA002777-PA|undefined
         (61 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D26018-1|BAA05039.1|  491|Homo sapiens KIAA0039 protein.               30   1.3  
BC108909-1|AAI08910.1|  427|Homo sapiens POLD3 protein protein.        30   1.3  
BC108908-1|AAI08909.1|  360|Homo sapiens POLD3 protein protein.        30   1.3  
BC020587-1|AAH20587.1|  168|Homo sapiens POLD3 protein protein.        30   1.3  
X64318-1|CAA45597.1|  462|Homo sapiens E4BP4 protein.                  28   4.0  
U26173-1|AAA93067.1|  462|Homo sapiens NF-IL3A protein.                28   4.0  
S79880-1|AAB35410.1|  462|Homo sapiens NF-IL3A protein.                28   4.0  

>D26018-1|BAA05039.1|  491|Homo sapiens KIAA0039 protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 5   PPPEATLDPVSNTD----DVIWEGGVNKKKLKRPGLSKNLIPNKKVI---KMYKEQKARD 57
           PPP   L+PV  T+     V    G NK+K KR   SK  +  +  I   K+Y+ +   D
Sbjct: 378 PPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTD 437

Query: 58  GKK 60
            ++
Sbjct: 438 SEE 440


>BC108909-1|AAI08910.1|  427|Homo sapiens POLD3 protein protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 5   PPPEATLDPVSNTD----DVIWEGGVNKKKLKRPGLSKNLIPNKKVI---KMYKEQKARD 57
           PPP   L+PV  T+     V    G NK+K KR   SK  +  +  I   K+Y+ +   D
Sbjct: 314 PPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTD 373

Query: 58  GKK 60
            ++
Sbjct: 374 SEE 376


>BC108908-1|AAI08909.1|  360|Homo sapiens POLD3 protein protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 5   PPPEATLDPVSNTD----DVIWEGGVNKKKLKRPGLSKNLIPNKKVI---KMYKEQKARD 57
           PPP   L+PV  T+     V    G NK+K KR   SK  +  +  I   K+Y+ +   D
Sbjct: 247 PPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTD 306

Query: 58  GKK 60
            ++
Sbjct: 307 SEE 309


>BC020587-1|AAH20587.1|  168|Homo sapiens POLD3 protein protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 5   PPPEATLDPVSNTD----DVIWEGGVNKKKLKRPGLSKNLIPNKKVI---KMYKEQKARD 57
           PPP   L+PV  T+     V    G NK+K KR   SK  +  +  I   K+Y+ +   D
Sbjct: 55  PPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTD 114

Query: 58  GKK 60
            ++
Sbjct: 115 SEE 117


>X64318-1|CAA45597.1|  462|Homo sapiens E4BP4 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 8  EATLDPVSNTDDVIWEGGVNKKKLKRPGLSKNLIPNKKVIKMYKEQKARDGK 59
          E + D  +  D ++ EG V K K       +  IP++K   MY E++ ++ +
Sbjct: 34 EVSEDSTTGEDVLLSEGSVGKNKSSACRRKREFIPDEKKDAMYWEKRRKNNE 85


>U26173-1|AAA93067.1|  462|Homo sapiens NF-IL3A protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 8  EATLDPVSNTDDVIWEGGVNKKKLKRPGLSKNLIPNKKVIKMYKEQKARDGK 59
          E + D  +  D ++ EG V K K       +  IP++K   MY E++ ++ +
Sbjct: 34 EVSEDSTTGEDVLLSEGSVGKNKSSACRRKREFIPDEKKDAMYWEKRRKNNE 85


>S79880-1|AAB35410.1|  462|Homo sapiens NF-IL3A protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 8  EATLDPVSNTDDVIWEGGVNKKKLKRPGLSKNLIPNKKVIKMYKEQKARDGK 59
          E + D  +  D ++ EG V K K       +  IP++K   MY E++ ++ +
Sbjct: 34 EVSEDSTTGEDVLLSEGSVGKNKSSACRRKREFIPDEKKDAMYWEKRRKNNE 85


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.309    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,849,790
Number of Sequences: 224733
Number of extensions: 362256
Number of successful extensions: 636
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 7
length of query: 61
length of database: 73,234,838
effective HSP length: 41
effective length of query: 20
effective length of database: 64,020,785
effective search space: 1280415700
effective search space used: 1280415700
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 57 (27.1 bits)