GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002777-TA|BGIBMGA002777-PA|undefined
         (61 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024841-3|AAK68542.1|  185|Caenorhabditis elegans Hypothetical ...    27   1.2  
Z82278-1|CAB05253.1|  135|Caenorhabditis elegans Hypothetical pr...    26   3.6  
AL117200-6|CAB55058.1|  209|Caenorhabditis elegans Hypothetical ...    25   6.3  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    25   6.3  

>AC024841-3|AAK68542.1|  185|Caenorhabditis elegans Hypothetical
           protein Y59H11AM.4 protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 13  PVSNTDDVIWEGGVNK-KKLKRPGL--SKNLIPNKKVIKMYKEQKARDGKKI 61
           PV N D  I E G+NK  K + P L   K+ + + K  ++ ++   RD K I
Sbjct: 132 PVENDDKKISEEGINKTDKTEEPELEKKKSELSDSKKERLREDDTLRDTKSI 183


>Z82278-1|CAB05253.1|  135|Caenorhabditis elegans Hypothetical
           protein M162.1 protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 13  PVSNTDDVIWEGGVNKKKLKRPGL 36
           P +NT  + W GG+ K K  RPG+
Sbjct: 110 PGANT--ITWIGGIRKAKCYRPGI 131


>AL117200-6|CAB55058.1|  209|Caenorhabditis elegans Hypothetical
           protein Y50E8A.10 protein.
          Length = 209

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 27  NKKKLKRPGLSKNLIPNKKVIKMYKEQKARDGKK 60
           NKK  K+     ++  +KK  K  K +K+  GKK
Sbjct: 79  NKKNKKKKSADSSMKISKKSSKSKKSKKSEKGKK 112


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
            constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 6    PPEATLDPVSNTDDVIWEGGV 26
            PPEA +D V  T   IW  GV
Sbjct: 1180 PPEAFIDGVFTTKSDIWSFGV 1200


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.309    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,481
Number of Sequences: 27539
Number of extensions: 63466
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 12,573,161
effective HSP length: 42
effective length of query: 19
effective length of database: 11,416,523
effective search space: 216913937
effective search space used: 216913937
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 51 (24.6 bits)