GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002776-TA|BGIBMGA002776-PA|undefined
         (568 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   1.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   7.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   7.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   7.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   7.5  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   9.9  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   9.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 311 RPESKKKLNTSDEDKPKNS 329
           +PE+ KK + SDE+KP  S
Sbjct: 76  KPENVKKEDESDEEKPTTS 94


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 259 CPYFYVCAN 267
           C YFYVC N
Sbjct: 192 CQYFYVCIN 200


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 66  SKNNTQEFKKPKLEDTQLDESN 87
           SKNN Q     K ++T L++SN
Sbjct: 303 SKNNDQCLDLSKTKETNLEKSN 324


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 66  SKNNTQEFKKPKLEDTQLDESN 87
           SKNN Q     K ++T L++SN
Sbjct: 195 SKNNDQCLDLSKTKETNLEKSN 216


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 42  PSGKKCLDLNFSRILDGEKRKNPFSKNNTQEFKKPKLEDTQLDESNDKTLFALLNL 97
           P G     L ++  +   K++ P+SK  T E +K  L +  + +     L   LNL
Sbjct: 227 PCGTSGNPLEWTGQVTVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLNL 282


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 119 NLLQKFTAEHSIETNQIEKNSKYLPIDW 146
           N LQ+ T     E NQ      Y P DW
Sbjct: 25  NFLQEKTTYEYYENNQALPPITYPPSDW 52


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 119 NLLQKFTAEHSIETNQIEKNSKYLPIDW 146
           N LQ+ T     E NQ      Y P DW
Sbjct: 16  NFLQEKTTYEYYENNQALPPITYPPSDW 43


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.130    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,191
Number of Sequences: 317
Number of extensions: 4704
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 568
length of database: 114,650
effective HSP length: 60
effective length of query: 508
effective length of database: 95,630
effective search space: 48580040
effective search space used: 48580040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)