Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002776-TA|BGIBMGA002776-PA|undefined
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 32 0.19
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 30 0.99
SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 29 1.3
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 29 2.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 4.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.3
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 27 7.0
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 7.0
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 7.0
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 27 9.3
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 32.3 bits (70), Expect = 0.19
Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 5/169 (2%)
Query: 296 RQTLRQEDVEFTMPLRPESKKKLNTSDEDKPKNSSFDSCYETMDDMGVRDPLXXXXXXXX 355
R +LR++ +F + S + + K KN +++DDM R
Sbjct: 1421 RDSLREDLEKFRSTGKNSSILEAQLREITKQKNM----LEQSLDDMRERQRSTNRNLDVL 1476
Query: 356 XXQFLTQLGFENDIIKNINIMQARLTNXXXXXXXXXXXXXXXXRGADAQALFNFLLNCKS 415
Q QL E DI+ + + ++ C+S
Sbjct: 1477 KKQIQNQLLQEADIVCATLSASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKYGCES 1536
Query: 416 LVSPTGPFAGVPPTLLSPTAFHGGTLQSLKVRENTIHSDSKKYYSIELR 464
V P +PPT+LS T+ G QSL VR H++S SI+ R
Sbjct: 1537 CVMVGDPNQ-LPPTVLSKTSAKFGYSQSLYVRMFKQHNESACLLSIQYR 1584
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 29.9 bits (64), Expect = 0.99
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 48 LDLNFSRILDGEKRKNPFSKNNTQEFKKPKL--EDTQLDESNDKTLFALLNLPAKVTEKP 105
+ +N I++GE N + F P+ + + +D D + A+ + A + P
Sbjct: 185 ITVNLVPIVNGENCFNFYETQMETNFLSPEFIKKPSMVDHKRDSEINAVTAVSADGSFSP 244
Query: 106 TQELNTEKLSTFSNLLQKFTAEHSIETNQIEKNSKYLPID 145
E + +ST SN + E NS+++P D
Sbjct: 245 LTETLSSTISTLSNDSLDGLSSQKNEFTGFNSNSEWIPND 284
>SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 116
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 76 PKLEDTQLDESNDKTLFALLNLPAKVTEKPTQELNTEKLSTFSNLLQKFT 125
P +E QL + +L L+ L K+T+ P Q + +L T +QK T
Sbjct: 66 PAIEVAQLQTLGEMSLKFLIKLIVKMTDCPRQSFSCSELITVLPTVQKLT 115
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 49 DLNFSRILDGEKRKNPFSKNNTQEFKKPKLEDTQLDESNDKTLF 92
DL+ IL ++ P + +++ E K P L D LD+ + +F
Sbjct: 332 DLSAQEILKNDQETTPSTNDSSSETKSPFLSDADLDQQDFWDIF 375
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 298 TLRQEDVEFTMPLRPESKKKL 318
T +QEDVEF +PL+PE + L
Sbjct: 38 TPKQEDVEFGVPLQPEDTQDL 58
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 284 PCALIAPTTRGFRQTLRQEDVEFTMPLRPESKKKLNTSDEDK-PKNSSFDSCYETMD 339
P LI P+TR F ++L Q V+ + ++K ++ K KNS +D+ ET +
Sbjct: 900 PPELIPPSTRNFTESLNQ--VKNLIKNDTSNRKPFGAENQSKLKKNSFYDNPSETTE 954
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 427 PPTLLSPTAFHGGTLQSLKVRENTIHSDSKKYYSIELRG 465
PP+ SP+ +G Q LK+R ++ H DS+ Y S G
Sbjct: 307 PPSPSSPSDAYGDPNQHLKLRTDS-HDDSRAYDSSSSMG 344
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 407 FNFLLNCKSLVSPTGPFAGVPPTLLSPTAFHGGTLQSLKVRENTIHSDSKKYYSIELRGP 466
FN + K L+ G G P L SP GT+ + ++ + + S+ Y S +R
Sbjct: 135 FNSDNSSKPLILNNGSSGGTPKNLRSPAIDSDGTVLA-PIQTSNVDLGSQYYSSPHVRPA 193
Query: 467 ILPTAVHSLFKVLKTN 482
+ T S + +N
Sbjct: 194 VGATMAGSAMRTFPSN 209
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 113 KLSTFSNLLQKFTAEHSIETNQIEKNSKYLPIDWALTTKLRLMSPKPFAWTSKLKASEEA 172
K + ++ K ++ +E N+ K L W L+ L +P + LK EA
Sbjct: 465 KSTKLKQIIAKIKSDLEVEANENAKMKAKLGPSWTLSDSLEFAAPYQSELNNYLKTLAEA 524
Query: 173 S 173
S
Sbjct: 525 S 525
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 66 SKNNTQEFKKPKLEDTQLDESNDKTLFALLNLPAKVTEKPTQELNTEK 113
S N T + +K + D + ND T +L+ + T +++L TE+
Sbjct: 330 SSNRTVQSQKRSIRDKYIQMPNDSTQASLMPSYTRKTSNASKKLTTEE 377
>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 26.6 bits (56), Expect = 9.3
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 74 KKPKLEDTQLDES-NDKTLFALLNLPAKVTEKPTQELNTEKLSTFSNLLQKFTAE---HS 129
K+ K D Q+ + + T +LP V+ + Q++N E L + L KF++ ++
Sbjct: 66 KQDKELDLQIQDCMREMTSIYDTHLPKTVSGRKRQKVNAETLLDYGRKLSKFSSAPPGYN 125
Query: 130 IETNQIEKNSKYLPIDWALTTKLR 153
ET Q K + P W ++R
Sbjct: 126 PETGQDAKAPVHYP--WPSEDQMR 147
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,684
Number of Sequences: 5004
Number of extensions: 99881
Number of successful extensions: 354
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 12
length of query: 568
length of database: 2,362,478
effective HSP length: 76
effective length of query: 492
effective length of database: 1,982,174
effective search space: 975229608
effective search space used: 975229608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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