Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002776-TA|BGIBMGA002776-PA|undefined
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 33 0.81
09_06_0220 + 21644642-21647293 31 2.5
03_02_0806 + 11391880-11391916,11392247-11393634 31 2.5
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654... 30 4.3
04_04_0809 - 28236216-28236679,28236776-28236899,28237049-282371... 30 4.3
03_06_0573 - 34815576-34815785,34816117-34816327,34816448-348166... 29 7.5
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 29 7.5
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 32.7 bits (71), Expect = 0.81
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 41 EPSGKKCLDLNFSRILDGEKRKNPFSKNNTQEFK--KPKLEDTQLDESNDKTLFALLNLP 98
E S + +D +FS E K+ ++NN+ E + +PKL+ T + +ND L + LP
Sbjct: 2255 ETSKQDDVDQDFSIHHQVEDEKSAETENNSAESEAVQPKLDITIAETNNDNNLSTINPLP 2314
Query: 99 AKVTEKPTQELNTEKLSTFSNLLQKFTAEHSIETNQIEK 137
TE + + +N A +IET ++EK
Sbjct: 2315 EHETENASDINQNRQYQEATN----EDAIDNIETGRVEK 2349
>09_06_0220 + 21644642-21647293
Length = 883
Score = 31.1 bits (67), Expect = 2.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 480 KTNSSAQFSATFAHQQSTLAFSWASSLMTEGEP 512
K NSS+ S+ FA +QS L+FS S ++ EP
Sbjct: 303 KINSSSSSSSLFARKQSKLSFSITSPKVSRSEP 335
>03_02_0806 + 11391880-11391916,11392247-11393634
Length = 474
Score = 31.1 bits (67), Expect = 2.5
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 407 FNFLLNCKSLVSPTGPFAGVPPTLLSPTAFHG-GTLQSLKVRENTIHSDSKKYYSIELRG 465
F++ + P+ F GVPP L S A G G +QS + HS K Y I L+G
Sbjct: 265 FSYCFTAITGSEPSPVFLGVPPNLYSDAAGGGHGVVQSTALIR--YHSSQLKAYYISLKG 322
Query: 466 PILPT 470
+ T
Sbjct: 323 VTVGT 327
>12_02_1157 +
26565040-26565081,26565189-26565262,26565343-26565460,
26565547-26565617,26565704-26565869,26565946-26566145,
26566669-26566880,26567404-26567522,26567952-26568053,
26568144-26568253,26568340-26568427,26568574-26568606,
26568635-26568834,26568916-26569120
Length = 579
Score = 30.3 bits (65), Expect = 4.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 269 FTCLFRAAGLCGVSEPC-ALIAPTTRGFRQTLRQEDVEFTMPL 310
F LF + C A ++ +TRG R LR+ V F+MPL
Sbjct: 300 FVALFIGGNCLDKKQTCNAYLSQSTRGIRSLLRRHGVCFSMPL 342
Score = 29.1 bits (62), Expect = 9.9
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 459 YSIELRGPILPTAVHSLFKVLKTNSSAQFSATFAHQQSTLAFSWASSLMTEGEPSKENEA 518
YS+E++ P+LP V S ++ + F A + S++ + A S ++ SK + +
Sbjct: 481 YSMEIKDPVLPPWVVSGICAAMSSDANSFDLMMATEPSSMGLNAALSCVSSNSQSKAHSS 540
>04_04_0809 -
28236216-28236679,28236776-28236899,28237049-28237191,
28237697-28237832,28238413-28238888,28238940-28239024
Length = 475
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 120 LLQKFTAEHSIETNQIEKNSKYLPIDWALTTKLRLMSPKPFAW 162
L+ +F A+ S+E + K S Y PI W L ++ + + + A+
Sbjct: 216 LVYEFMAKGSLENHLFRKGSAYQPISWNLCLRIAIGAARGLAF 258
>03_06_0573 -
34815576-34815785,34816117-34816327,34816448-34816623,
34816701-34816882,34817431-34817580,34817654-34817894
Length = 389
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 119 NLLQKFTAEHSIETNQIEKNSKYLPIDWALTTKLR 153
+LL K + HS++ N+ K++++LP + L TKLR
Sbjct: 52 HLLHKISDHHSLDLNETGKDARFLPRAY-LWTKLR 85
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 491 FAHQQSTLAFSWASSLMTEGEPSKENEANHFTKAFNKENLSDCGLSEDMLQHFCS 545
F H Q L FSW SSL+ EG + + + + K + + L D+ + CS
Sbjct: 838 FVHCQQALDFSW-SSLLREGRAKVPDNFGNLSGSDLKVEVMEEKLLRDLTREVCS 891
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.130 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,072,509
Number of Sequences: 37544
Number of extensions: 565593
Number of successful extensions: 1399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1393
Number of HSP's gapped (non-prelim): 11
length of query: 568
length of database: 14,793,348
effective HSP length: 86
effective length of query: 482
effective length of database: 11,564,564
effective search space: 5574119848
effective search space used: 5574119848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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