GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002776-TA|BGIBMGA002776-PA|undefined
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4473| Best HMM Match : No HMM Matches (HMM E-Value=.)              248   1e-65
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.087
SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.087
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)                      34   0.27 
SB_396| Best HMM Match : DUF217 (HMM E-Value=4.3)                      30   5.7  
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)            30   5.7  
SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   7.6  
SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04)                       29   7.6  

>SB_4473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score =  248 bits (606), Expect = 1e-65
 Identities = 157/480 (32%), Positives = 239/480 (49%), Gaps = 46/480 (9%)

Query: 60  KRKNPFSKNNTQEFKKPKLEDTQLDESNDKTLFALLNLPAKVTEKPTQELN----TEKLS 115
           KR+NPF        K+P L    +DE +++   AL       T   ++E +     +K+ 
Sbjct: 56  KRRNPFG---CPPQKRPNLRKETVDEEHNRLFQALSERTEAATCSASKENDYKSEQKKMR 112

Query: 116 TFS-NLLQKFTAEHSIETNQIEK------NSKYLPIDWALTTKLRLMSPKPFAWTSKLKA 168
             S +  Q+ T+    +T+ IE+      +S  +P+DW+L TK+R  S + F+W S LK+
Sbjct: 113 IASMSFEQQTTSSVPPDTDDIEETEEVAGSSNTIPLDWSLKTKVRFTSSQSFSWVSSLKS 172

Query: 169 SEEASGITGFVRC----XXXXXXXXXXXXXRARFHQTCLYWQHPHLPWLEMFPRSSG--- 221
           SE A GI+ FVRC                 R   H+ C  W HP LPWL++FPRS+    
Sbjct: 173 SELAEGISDFVRCEPKEFDDLDENMDFNQARTLLHKICRSWAHPFLPWLKLFPRSNNNEK 232

Query: 222 ------KVTATSFLATNEEVKKALYDEWTESFRSLFQLVRALHCPYFYVCANTFTCLFRA 275
                 +    S +  +E +  +L  +W  SF S+F L+R  +CPYF++CAN  T LFRA
Sbjct: 233 ALAEPRQTNTQSNVFVDESLASSLQADWVNSFHSVFNLLRCGNCPYFFMCANQCTMLFRA 292

Query: 276 AGLCGVSEPCALIAPTTRGFRQTLRQEDVEFTMPLRPESKKKLNTSDEDKPKNSSFDSCY 335
           AG+    +  A+I PTT+G R+ L+ E ++FT+P        L+T    +P  SS DS  
Sbjct: 293 AGISS-DDVDAVITPTTKGLREALKNEGIDFTLP-------HLSTPTHGEPSTSSSDSED 344

Query: 336 ETMDDMGVRDPLXXXXXXXXXXQFLTQLGFENDIIKNINIMQARLTNXXXXXXXXXX-XX 394
           E   D    D            ++L  +G   +        +   T              
Sbjct: 345 EATSDCDDED------DASDGGEWLESMGLGKEQFPTYEPNKLTTTQTAKIRTTDQNPAS 398

Query: 395 XXXXRGADAQALFNFLLNCKSLVSPTGPFAGVPPTLLSPTAFHGGTLQSLKVRENTI-HS 453
               RG D +ALFNF+LN +S+V   G  AGVPPTLL+P AF G TL+SLKV + T+ H 
Sbjct: 399 TVYVRGQDTRALFNFILNWRSIVPKNGQLAGVPPTLLAPVAFEGATLRSLKVNQGTVKHQ 458

Query: 454 DSK---KYYSIELRGPILPTAVHSLFKVLKTNSSAQFSATFAHQQSTLAFSWASSLMTEG 510
            SK   + +S+E+ GP++P+ VH +  ++K+     + A F  QQ+++A ++ S     G
Sbjct: 459 QSKGLQQLFSLEITGPLMPSVVHDICCLIKSTQEGSYQAAFVPQQNSVAINFVSQPSVTG 518


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 35.9 bits (79), Expect = 0.087
 Identities = 21/82 (25%), Positives = 35/82 (42%)

Query: 298 TLRQEDVEFTMPLRPESKKKLNTSDEDKPKNSSFDSCYETMDDMGVRDPLXXXXXXXXXX 357
           T+ ++    +    PE KKKL  S ++K +  S +S  +  ++      L          
Sbjct: 415 TINEDSSMASATRAPERKKKLRPSKKEKRQAVSGESSTKAQEESRTGKELERFPKDFRSK 474

Query: 358 QFLTQLGFENDIIKNINIMQAR 379
           Q +    FEND +KN+   Q R
Sbjct: 475 QLIKDAIFENDFLKNLEAAQVR 496


>SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 35.9 bits (79), Expect = 0.087
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 41  EPSGKKCLDLNFSRILDGEKRKNPFSKNNTQEFKKPKLEDTQLDESNDKTLF-ALLNLPA 99
           E   +  + L F R++D EK +   + N T E  K KL   + + + D   + + ++   
Sbjct: 266 EEKVRNMMMLKFGRLVDLEKLET-VTVNRTVEELKEKLRQAESESARDVAKWDSKIDSYK 324

Query: 100 KVTEKPTQELNTEKLSTFSNLLQ-KFTAEHSIETNQ 134
           + + + T+E NT++L TF+ LLQ K   EH +++ Q
Sbjct: 325 QKSTQLTRE-NTQRLDTFTVLLQEKKELEHMLDSRQ 359


>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
          Length = 374

 Score = 34.3 bits (75), Expect = 0.27
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 35  LASTSAEPSGKKCLDLNFSRILDGEKRKNPFSKNNTQEFKKPKLEDTQLDESND---KTL 91
           L  T+ + +  K  +L+ S+I   ++ K P  KN  +  KK + +D Q +E  D   K  
Sbjct: 257 LEETTEKSNHAKRENLSPSKIHKKDREKTPTKKNKEKNVKKNEEKDVQKEEEKDVQKKVE 316

Query: 92  FALLNLPAKVTEKPTQELNTEKLSTFSNLLQKFTAEHSIETNQIEKNSK 140
            +  +LP K  E    E  T+K      L ++ + +  IE  + EK  K
Sbjct: 317 KSAKHLPQKKPESKKHE-QTKKDLKGRKLKRQLSDKEKIEEIKKEKLKK 364


>SB_396| Best HMM Match : DUF217 (HMM E-Value=4.3)
          Length = 262

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 69  NTQEFKKPKLEDTQLDE-SNDKTLFALLNLPAKVTEKPTQELNTEKLSTFSNLLQKFTAE 127
           NTQ  K+ +++D +    + D  +  L  L  +V E   +E   EKL    + L+++T +
Sbjct: 46  NTQGLKEEQIKDLEKKSVALDTRVSTLGKLVVRVEENAAKEEYIEKLEVKLDSLKQYTRK 105

Query: 128 HSIE 131
           +SIE
Sbjct: 106 NSIE 109


>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
          Length = 670

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 77  KLEDTQLDESNDKTLFALLNLPAKVTEKPTQELNTEKLSTFSNLLQKFTAEH--SIETNQ 134
           KLE+  L+ SN+ T  +  + P +V EK  + L  +KL    +L +K  +    S E  Q
Sbjct: 591 KLENVTLNASNNTTPQSYTSNPDEVKEKKLKNLK-KKLRQIEDLQRKIDSGEIVSPEATQ 649

Query: 135 IEKNSKYLPID 145
           +EK S+   ++
Sbjct: 650 LEKLSRRAEVE 660


>SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 893

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 501 SWASSLMTEGEPSKENEANHFTKAFNKENLSDCGL 535
           SW SS+  E EP  E +A+  + +F + + +D GL
Sbjct: 664 SWLSSISVEDEPEPEPQADTSSTSFGRYSGADFGL 698


>SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04)
          Length = 474

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 55  ILDGEKRKNPFSKNNTQEFKKPKLEDTQLDESNDKTLFALLN---LPAKVTEKPTQELNT 111
           I+D     +  +  NT++ KK  L+ T L E   + L   L    +  K  ++   +   
Sbjct: 186 IVDHRSFNSLMNAVNTEKEKKAALQQTILKEEESRRLVKSLQRQLVEVKKEKESEIQQRN 245

Query: 112 EKLSTFSNLLQKFTAEHSIETNQIEKNSKYL 142
           E ++   + LQ+  A+ S+E   I+K+++ L
Sbjct: 246 EMIAHLKDQLQEMKAKTSMEGKYIKKDAERL 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.130    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,721,379
Number of Sequences: 59808
Number of extensions: 682340
Number of successful extensions: 1814
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1803
Number of HSP's gapped (non-prelim): 10
length of query: 568
length of database: 16,821,457
effective HSP length: 86
effective length of query: 482
effective length of database: 11,677,969
effective search space: 5628781058
effective search space used: 5628781058
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)