GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002776-TA|BGIBMGA002776-PA|undefined
         (568 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.55 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 0.55
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 34  PLASTSAEPSGK-KCLDLNFSRILDGEKRKNPFSKNNTQEFKKPKLEDTQLDESND--KT 90
           P+  + A  SG  + L    +       R+N  +  + + FK P L ++ L+  N+  + 
Sbjct: 594 PINGSGASGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTLTESLLNRHNEDMEK 653

Query: 91  LFALLNLPAKVTEKPTQEL------NTEKLSTFSNLLQKFTAEHSIE 131
           L  L +   + + K + +L       TEKLST  N   +    H I+
Sbjct: 654 LMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQSHGIK 700


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 407 FNFLLNCKSLVSPT 420
           F++LLNCK+   PT
Sbjct: 29  FSYLLNCKNYDHPT 42


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,576
Number of Sequences: 429
Number of extensions: 5830
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 568
length of database: 140,377
effective HSP length: 61
effective length of query: 507
effective length of database: 114,208
effective search space: 57903456
effective search space used: 57903456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)