GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002775-TA|BGIBMGA002775-PA|undefined
         (89 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   2.2  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    24   3.9  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    23   5.1  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    23   8.9  

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 37   KYDKDHDIVERTTRPSSDVIPVLNQDQMIILALLNTVNELPGGN 80
            KYD D  +  R    SSD +P + +D  +  A+ + +     G+
Sbjct: 1245 KYDIDFSLFRRYKIVSSDALPAIVRDVTLNAAVFSHIYHRSAGD 1288


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 37  KYDKDHDIVERTTRPSSDVIPVLNQDQMIILALL 70
           +Y K H+I     + S +++P+L  D++ + A L
Sbjct: 145 RYIKKHNISFADPKSSENLLPILQFDELDVSAKL 178


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 61  QDQMIILALLNTVNELPGGNTGIL 84
           Q++ ++ +   T+  LPGG+TGIL
Sbjct: 468 QNKRLLRSFDRTLLILPGGSTGIL 491


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 53  SDVIPVLNQDQMIILALLNTVNELP 77
           S+  P+ N    +ILA LNT   +P
Sbjct: 560 SEQAPIYNSTYELILASLNTSEPVP 584


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,227
Number of Sequences: 5004
Number of extensions: 10989
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 89
length of database: 2,362,478
effective HSP length: 61
effective length of query: 28
effective length of database: 2,057,234
effective search space: 57602552
effective search space used: 57602552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)