GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002775-TA|BGIBMGA002775-PA|undefined
         (89 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)               27   2.8  
SB_8432| Best HMM Match : IlvC (HMM E-Value=4)                         27   2.8  
SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)                26   3.7  
SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)                   26   3.7  
SB_34888| Best HMM Match : GHMP_kinases (HMM E-Value=0.72)             26   3.7  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)
          Length = 693

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 54 DVIPVLNQDQMIILALLNTVNELPGGNTGILNSVR 88
          D  PVL  ++ + L LL  +     GN+GIL  V+
Sbjct: 31 DNFPVLKAERGVTLGLLKLIYSSDEGNSGILLGVK 65


>SB_8432| Best HMM Match : IlvC (HMM E-Value=4)
          Length = 221

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 38 YDKDHDIVERTTRPSSDVIPVLNQDQMIILALLN 71
          Y K H      TR  +D++  ++  Q +IL LL+
Sbjct: 26 YKKGHSTETALTRVQNDILRAIDDGQSVILVLLD 59


>SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)
          Length = 526

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 38  YDKDHDIVERTTRPSSDVIPVLNQDQMIILALLN 71
           Y K H      TR  +D++  ++  Q +IL LL+
Sbjct: 447 YKKGHSTETALTRIQNDILRAIDDGQSVILVLLD 480


>SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)
          Length = 556

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 38  YDKDHDIVERTTRPSSDVIPVLNQDQMIILALLN 71
           Y K H      TR  +D++  ++  Q +IL LL+
Sbjct: 368 YKKGHSTETALTRIQNDILRAIDDGQSVILVLLD 401


>SB_34888| Best HMM Match : GHMP_kinases (HMM E-Value=0.72)
          Length = 258

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 42  HDIVERTTRPSSDVIPVLNQDQMIILALLNTVNELPGGNTGILNSV 87
           H + + T  P +   P +N    +++ L+   N   G N G+LN++
Sbjct: 175 HAVCQDTYPPITP--PYMNSTSHLVVQLVTAYNNNHGNNKGLLNAI 218


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 33   VAGHKYDKDHDIVERTTRPSSDVIPVLNQDQMIILALLNTVNELPGGNTGIL 84
            +AG K         +T  P S++  ++ +D+ I L LL  +N     N G+L
Sbjct: 2699 IAGGKTKPSPSGSIKTDLPKSELPEIIIKDEKICLNLLCCLNLSNSNNIGVL 2750


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 45  VERTTRPSSDVIPVLNQDQMIILALLNTVNELPGGNTGILNSV 87
           V++T  P S V+  +N D+  +   L+  N+ P    G    V
Sbjct: 434 VQKTATPDSVVMATVNTDRQDVEVELDAPNKSPQAGNGFQEDV 476


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,005
Number of Sequences: 59808
Number of extensions: 78821
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 7
length of query: 89
length of database: 16,821,457
effective HSP length: 66
effective length of query: 23
effective length of database: 12,874,129
effective search space: 296104967
effective search space used: 296104967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)