GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002775-TA|BGIBMGA002775-PA|undefined
         (89 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125463-7|AAD12863.1|  148|Caenorhabditis elegans Hypothetical ...    28   0.92 
AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical...    27   1.6  
Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    25   6.5  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    25   6.5  
Z72502-3|CAA96588.1|  423|Caenorhabditis elegans Hypothetical pr...    25   8.6  

>AF125463-7|AAD12863.1|  148|Caenorhabditis elegans Hypothetical
           protein Y49F6C.2 protein.
          Length = 148

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 44  IVERTTRPSSDVIPVLNQDQM-----IILALLNTVNELPGGNTGILNSV 87
           +VE+  RP  D++ +  Q Q+     + LA +NT++E+     G L+ +
Sbjct: 84  LVEKYERPKRDILNIAKQYQLENLKKLCLAKINTIDEIKAAMAGNLSDM 132


>AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical
           protein F52C6.14 protein.
          Length = 779

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 41  DHDIVERTTRPSSDVIPVLNQDQMI--ILALLNTVNE 75
           D D++++TTR   ++I    QD++I  IL+LL  ++E
Sbjct: 382 DKDLLDKTTRALRELIREPRQDRLIHRILSLLTELDE 418


>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 54  DVIPVLNQDQMIILALLNTVNELPGGN 80
           DV P ++  QMII    +T+NE    N
Sbjct: 667 DVAPAIDPQQMIISLAFSTMNEWDNDN 693


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 54  DVIPVLNQDQMIILALLNTVNELPGGN 80
           DV P ++  QMII    +T+NE    N
Sbjct: 667 DVAPAIDPQQMIISLAFSTMNEWDNDN 693


>Z72502-3|CAA96588.1|  423|Caenorhabditis elegans Hypothetical
           protein C08B6.5 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 47  RTTRPSSDVIPVLNQDQMIILAL 69
           R T P S  IP L+Q+Q+I L L
Sbjct: 197 RLTAPPSSRIPFLHQNQLIELLL 219


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,559
Number of Sequences: 27539
Number of extensions: 57561
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 5
length of query: 89
length of database: 12,573,161
effective HSP length: 68
effective length of query: 21
effective length of database: 10,700,509
effective search space: 224710689
effective search space used: 224710689
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)