Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002774-TA|BGIBMGA002774-PA|undefined
         (204 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.22 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   4.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 131 ISGYIDYAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHG 171
           + G +D+ +   +E+ A         WPR K+LG     HG
Sbjct: 118 LGGDLDWKYYTTNESHACLSTGGSCYWPRGKNLGGTTLHHG 158


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 165 YYHWRHGTVRSNISRNYKIP 184
           Y++W +  V  +I + Y++P
Sbjct: 839 YWNWSNQDVIKSIEKGYRLP 858


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 169 RHGTVR-SNISRNYKIPNKTQGRIQRR 194
           RH + R S + RN++ P     R++RR
Sbjct: 21  RHQSDRYSKLKRNWRKPKGIDNRVRRR 47


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,604
Number of Sequences: 429
Number of extensions: 2312
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 204
length of database: 140,377
effective HSP length: 55
effective length of query: 149
effective length of database: 116,782
effective search space: 17400518
effective search space used: 17400518
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)