GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002774-TA|BGIBMGA002774-PA|undefined
         (204 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0377 - 24498664-24500215,24500306-24500643                       27   8.0  
04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920     27   8.0  
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118...    27   8.0  

>05_05_0377 - 24498664-24500215,24500306-24500643
          Length = 629

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 12 PGV-EADRRLLPFVTWEEYLDSLIDIAD 38
          PG  EA RRL P VT+E+ L  ++ IA+
Sbjct: 68 PGADEAFRRLAPLVTYEDILPDVLRIAN 95


>04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920
          Length = 128

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 11  PPGVEADRRLLPFVTWEEYLDSLIDIAD-LRNLRS 44
           PP  EA RRL+P     EY   L + AD LR+LR+
Sbjct: 78  PPRAEALRRLVPGGAGMEYSSLLEETADYLRSLRA 112


>01_05_0740 -
           24809951-24810394,24810622-24810700,24811651-24811809,
           24812083-24812246,24812436-24812624,24813151-24813408,
           24813463-24813951,24814062-24814262,24814368-24814639,
           24814661-24814685,24814776-24814937,24815065-24815104,
           24815244-24815353,24815812-24815898,24816013-24816507
          Length = 1057

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 95  IDDPFSRELAIRERANRVGILQSIIFIRHFTKGGFEISGYIDYAH-RLVSE----NWAQF 149
           IDD FS      ERA+ +  ++  +    F K   ++SG+ID    +  SE     W + 
Sbjct: 599 IDDTFSLMAWEEERADEIANIKKRLEEEEFWKEHLQVSGWIDIMQLKERSEQPHGTWEEV 658

Query: 150 FRSKKMLWPRDKDL 163
           +R+ K +     DL
Sbjct: 659 YRNVKRVERMKNDL 672


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,011,367
Number of Sequences: 37544
Number of extensions: 228732
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 3
length of query: 204
length of database: 14,793,348
effective HSP length: 79
effective length of query: 125
effective length of database: 11,827,372
effective search space: 1478421500
effective search space used: 1478421500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)