GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002774-TA|BGIBMGA002774-PA|undefined
         (204 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034296-1|AAH34296.1|  233|Homo sapiens chromosome 4 open readi...   124   2e-28
AY349359-1|AAQ56723.1|  250|Homo sapiens unknown protein.             108   1e-23
AK128642-1|BAC87545.1|  156|Homo sapiens protein ( Homo sapiens ...    58   2e-08

>BC034296-1|AAH34296.1|  233|Homo sapiens chromosome 4 open reading
           frame 22 protein.
          Length = 233

 Score =  124 bits (299), Expect = 2e-28
 Identities = 72/174 (41%), Positives = 97/174 (55%), Gaps = 4/174 (2%)

Query: 13  GVEA-DRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYTR 71
           G++A D  +  F  +E++LDS I   DL  L     AR +  LGYR  G+ +  ++F  R
Sbjct: 6   GLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKREDFEAR 65

Query: 72  RAVINEIVYPTVKAY--VLVSEGVVIDDPFSRELAIRERANRVGILQSIIFIRHFTKGGF 129
           +A I EI     +A    L S G  + D F   LA+RE  NR G L S+IFIR     G 
Sbjct: 66  KAAI-EIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSSVIFIRDRNSHGQ 124

Query: 130 EISGYIDYAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHGTVRSNISRNYKI 183
           EISGYIDYAHRL +E++  +F  KK L PR  D+ +Y+W      SN S NY++
Sbjct: 125 EISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQV 178


>AY349359-1|AAQ56723.1|  250|Homo sapiens unknown protein.
          Length = 250

 Score =  108 bits (260), Expect = 1e-23
 Identities = 73/191 (38%), Positives = 98/191 (51%), Gaps = 21/191 (10%)

Query: 13  GVEA-DRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYTR 71
           G++A D  +  F  +E++LDS I   DL  L     AR +  LGYR  G+ +  ++F  R
Sbjct: 6   GLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKREDFEAR 65

Query: 72  RAVINEIVYPTVKAY--VLVSEGVVIDDPFSRELAIRERANRVGILQ------------- 116
           +AVI EI     +A    L S G  + D F   LA+RE  NR G L              
Sbjct: 66  KAVI-EIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSLNQQETDAAHTLK 124

Query: 117 ----SIIFIRHFTKGGFEISGYIDYAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHGT 172
               S+IFIR     G EISGYIDYAHRL +E++  +F  KK L PR  D+ +Y+W    
Sbjct: 125 KQLASVIFIRDGNSHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADI 184

Query: 173 VRSNISRNYKI 183
             SN S NY++
Sbjct: 185 AVSNSSPNYQV 195


>AK128642-1|BAC87545.1|  156|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46801 fis, clone TRACH3032044. ).
          Length = 156

 Score = 58.0 bits (134), Expect = 2e-08
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 4/114 (3%)

Query: 13  GVEA-DRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYTR 71
           G++A D  +  F  +E++LDS I   DL  L     AR +  LGYR  G+ +  ++F  R
Sbjct: 6   GLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKREDFEAR 65

Query: 72  RAVINEIVYPTVKAY--VLVSEGVVIDDPFSRELAIRERANRVGILQSIIFIRH 123
           +A I EI     +A    L S G  + D F   LA+RE  NR G L + +   H
Sbjct: 66  KAAI-EIARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSAGVQWHH 118


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,637,828
Number of Sequences: 224733
Number of extensions: 1086706
Number of successful extensions: 1518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1513
Number of HSP's gapped (non-prelim): 4
length of query: 204
length of database: 73,234,838
effective HSP length: 86
effective length of query: 118
effective length of database: 53,907,800
effective search space: 6361120400
effective search space used: 6361120400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)