GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002774-TA|BGIBMGA002774-PA|undefined
         (204 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ...    30   1.0  
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    29   3.1  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       29   3.1  
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AL132948-47|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    27   7.1  
AC006792-2|AAF60742.3|  406|Caenorhabditis elegans Hypothetical ...    27   7.1  

>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
           protein R09A1.1 protein.
          Length = 1121

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 11  PPGVEADRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYT 70
           PP     +RL   +  E Y   L D++    LR    AR   ++  R N        F  
Sbjct: 317 PPKYTVFKRLTYLICEEAYEPELPDVSLCHKLRIGTDARVGVSIAIRTNLRAGITACFDL 376

Query: 71  RRAVINEIVYPTVKAYV-LVSEGVVIDDPFSRELAIRERANRVGILQSIIFIRHFTKGGF 129
              +     YP V+    ++   VV+D+ F  +     RA  V      +  +  TK   
Sbjct: 377 GHTLFTRPAYPLVRLLCDIIEHSVVLDEAFEMKYDAALRACNVSDENLRVMTQILTKMTL 436

Query: 130 EIS 132
           ++S
Sbjct: 437 QLS 439


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
           protein 40 protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 14  VEADRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYT--- 70
           V  + R  P +T        ++ AD+     TAAAR  A + +  NG+ +   E++    
Sbjct: 328 VSVEVRAPPRITTRPTTKVAVETADVELECGTAAARPEARVNWYKNGEAIIGSEYFVIEP 387

Query: 71  RRAVINEIVYPTVKAYVLVSEGVVIDDPFSRELAI 105
            R  I  +V      Y  ++E  V  +  S +L +
Sbjct: 388 NRLRILGVVRADQAIYQCIAENDVGSEQASAQLLV 422


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 14  VEADRRLLPFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFYT--- 70
           V  + R  P +T        ++ AD+     TAAAR  A + +  NG+ +   E++    
Sbjct: 328 VSVEVRAPPRITTRPTTKVAVETADVELECGTAAARPEARVNWYKNGEAIIGSEYFVIEP 387

Query: 71  RRAVINEIVYPTVKAYVLVSEGVVIDDPFSRELAI 105
            R  I  +V      Y  ++E  V  +  S +L +
Sbjct: 388 NRLRILGVVRADQAIYQCIAENDVGSEQASAQLLV 422


>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
           protein R09H3.1 protein.
          Length = 1073

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 24  VTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKEFY 69
           +TW+E  D + D  D    R+    R V  + +  N D   E E+Y
Sbjct: 431 LTWKEVHDMVADCIDTIKARTKLDRRAVTTIHHSPNNDQY-ESEYY 475


>AL132948-47|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 13  GVEADRRLL---PFVTWEEYLDSLIDIADLRNLRSTAAARTVAALGYRANGDTLSEKE 67
           G+ A R +L   PF   EE L  L +    +N   + AAR++  L    N   L+ K+
Sbjct: 440 GINAIREILSNCPFAATEELLRDLSEYKTYKNKNVSMAARSLITLFRAVNPKLLARKD 497


>AC006792-2|AAF60742.3|  406|Caenorhabditis elegans Hypothetical
           protein Y50C1A.2 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 78  IVYPTVKAYVLVSEGVVIDDPFSRELAIR 106
           ++Y T  A V  SEG+V + PF   LA+R
Sbjct: 318 VIYHTSNAAVFNSEGLVDEIPFVATLAVR 346


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,021,300
Number of Sequences: 27539
Number of extensions: 189453
Number of successful extensions: 353
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 6
length of query: 204
length of database: 12,573,161
effective HSP length: 78
effective length of query: 126
effective length of database: 10,425,119
effective search space: 1313564994
effective search space used: 1313564994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)