Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002772-TA|BGIBMGA002772-PA|undefined
(77 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0238 + 16730444-16730448,16730484-16730586,16732043-167320... 29 0.48
02_05_0478 - 29343548-29343682,29343831-29343833,29344261-293444... 28 0.83
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 27 1.9
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022... 27 1.9
03_02_0685 + 10401281-10401463,10403296-10403700 27 2.5
06_03_0568 + 22351552-22351679,22352176-22352227,22353044-223531... 26 3.3
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653... 25 5.9
01_07_0204 + 41974475-41976766 25 5.9
>02_03_0238 +
16730444-16730448,16730484-16730586,16732043-16732099,
16732198-16732346,16732450-16732545,16732620-16732695,
16732810-16732883,16732991-16733408
Length = 325
Score = 29.1 bits (62), Expect = 0.48
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 17 VMAILEEAHEEISVIKKNKIWVRKWINRRDKLGATKCLLKELALEEIPKNT 67
VM E H ++ K ++ K I+ + L ATK L KEL++ E+ +NT
Sbjct: 13 VMGRKEFDHPKLQADTIGKRFLWKCISEEELLQATKELDKELSMHEMRRNT 63
>02_05_0478 -
29343548-29343682,29343831-29343833,29344261-29344401,
29344496-29344638,29345004-29345161,29345261-29345342,
29345506-29345603,29345726-29345880,29346200-29346283,
29346541-29346681
Length = 379
Score = 28.3 bits (60), Expect = 0.83
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 11 KLIKLIVMAILEEAHEEISVIKKNKIWVRKWIN 43
K++ L ++ +L+EA+ E S ++ WV+K N
Sbjct: 196 KILDLPILVVLDEAYIEFSSLQTRMSWVKKHDN 228
>10_08_0585 -
18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 16 IVMAILEEAHEEISVIKKNKIWVRKWINRRDKLGATKCLLKELALEEIPKNTSIVWECPK 75
+V I ++A E+I I++ + K I ++L +EL + IP + + W P
Sbjct: 791 LVAGIAKQAVEKIDKIREIAVKTLKRILYNEELFVPSIPYRELLEQIIPNSADLEWAVPA 850
Query: 76 V 76
V
Sbjct: 851 V 851
>01_06_1149 -
34901338-34901466,34901707-34901838,34901940-34902290,
34902301-34902619,34902756-34902784,34903641-34903715,
34903799-34903900,34904002-34904120,34904752-34904875,
34904976-34905026,34905143-34905241,34905751-34905861
Length = 546
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 41 WINRRDKLGATKCLLKELALEEIPKNT 67
++ + DK+G K LLKEL EE T
Sbjct: 343 FVGKHDKMGMNKILLKELPPEETKVTT 369
>03_02_0685 + 10401281-10401463,10403296-10403700
Length = 195
Score = 26.6 bits (56), Expect = 2.5
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 MNRLQRNRVNKLIKLIVMAILEEAHEEISVIKKNKIW--VRKWINRRDKLGATKCLLKEL 58
+ + R+ V++L++ ++A+L E + V+ KI+ VRK I R + + +L L
Sbjct: 27 LEQFMRSHVSRLLRNDLLAVLAELLRQDHVLLSMKIYSVVRKEIWYRPDMYFYRDMLYML 86
Query: 59 ALEEIPKNTSIVW 71
A + + T VW
Sbjct: 87 ARNKKIEETRQVW 99
>06_03_0568 +
22351552-22351679,22352176-22352227,22353044-22353117,
22353233-22353322,22353833-22353976,22354885-22354973,
22355539-22355612,22357233-22357317,22357677-22357952,
22358392-22358420
Length = 346
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 19 AILEEAHEEISVIKKNKIWVRKWINRRDKLGATKCLLKELAL 60
A L EA+ + +++W R+W + LG++ + L L
Sbjct: 236 ARLPEANHACPAMMSDRVWPRRWQAKEPPLGSSSAHRRSLPL 277
>11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,
6534267-6534316,6535110-6537065,6537458-6538209
Length = 1075
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 26 EEISVIKKNKIWVRKWINRRDKLGATKC 53
E+ SV K+ + VR+ NR D +TKC
Sbjct: 1041 EKPSVFDKDDLLVRRTRNRNDGHASTKC 1068
>01_07_0204 + 41974475-41976766
Length = 763
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 3 RLQRNRVNKLIKLIVMAILEEAHEEISVI 31
RLQR++ K++++ ++ + E H + SVI
Sbjct: 312 RLQRDQAYKVVEIELLLMYESLHSKSSVI 340
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,586
Number of Sequences: 37544
Number of extensions: 59498
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 9
length of query: 77
length of database: 14,793,348
effective HSP length: 56
effective length of query: 21
effective length of database: 12,690,884
effective search space: 266508564
effective search space used: 266508564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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