GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002772-TA|BGIBMGA002772-PA|undefined
         (77 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical...    30   0.17 
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ...    30   0.22 
U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical pr...    29   0.39 
Z79695-3|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    27   1.2  
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    27   1.6  
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z46934-1|CAA87039.1|  226|Caenorhabditis elegans Hypothetical pr...    26   3.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    26   3.7  
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...    25   6.4  
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    25   6.4  
AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    25   6.4  
Z81096-1|CAB03161.2|  410|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical ...    25   8.4  

>AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical
           protein T02H6.1a protein.
          Length = 550

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 10/33 (30%), Positives = 22/33 (66%)

Query: 16  IVMAILEEAHEEISVIKKNKIWVRKWINRRDKL 48
           +++ ++EE++  +++ KK K W + W  R+ KL
Sbjct: 477 LLLVVVEESNRVMNLKKKKKSWRKSWKRRKKKL 509


>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
           protein F55A12.8 protein.
          Length = 1043

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 21  LEEAHEEISVIKKNKIWVRKWINRRDKLGATKCLLK 56
           L E H E S+  K    + KW+NR   L AT C LK
Sbjct: 452 LHEMHMEESIRYKPGDKIEKWLNRLLCLDATNCQLK 487


>U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical
           protein T22F7.1 protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 10  NKLIKLIVMAILEEAHEEISVIKKNKIWVRKWINRRDKLGATK 52
           N L+ + +M  L E+    S+ KKN+  V+KWI R + L   K
Sbjct: 253 NILVAVFLMGTLPES-VGYSIEKKNRKAVQKWIKRNELLSCKK 294


>Z79695-3|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 46  DKLGATKCLLKELALEEIPKNTSIVWEC 73
           DK+     L+K  + EE  KNT + W+C
Sbjct: 578 DKINELLTLIKSKSSEEKAKNTRVNWKC 605


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 30  VIKKNKIWVRKWINRRDKLGATKCLLKELALE-EIPKNTSIVWECPKVV 77
           ++KK+ ++++K+I +   LG  K  L EL    + P      W  P+V+
Sbjct: 659 LLKKHPVYIKKYICKITDLGLAKTCLDELYTSYDDPTKIPFKWLPPEVL 707


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
           protein F09C3.1 protein.
          Length = 1391

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 21  LEEAHEEISVIKKNKIWVRKWINRRDKLGAT 51
           LEE  E+I ++ KN++ +++ I  RDK  A+
Sbjct: 713 LEEMDEKIGLLIKNRLNLQEVIAHRDKTAAS 743


>Z46934-1|CAA87039.1|  226|Caenorhabditis elegans Hypothetical
           protein ZK1320.1 protein.
          Length = 226

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 17  VMAILEEAHEEISVIKKNKIWVRKWINRRDKL 48
           V+ +L+E  +E+ +    ++WVR W +R +K+
Sbjct: 102 VLLVLQEQDKELMLRAAREMWVRLW-SRSEKI 132


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 11   KLIKLIVMAILEEAHEEISVIKKNKIWVRKWINRRD 46
            K+++    AI  E H++  V++K   W RK + +R+
Sbjct: 3093 KIVRRFKDAINVELHDDFGVLQKVDEWKRKVLQQRN 3128


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
           protein F09F7.3 protein.
          Length = 1154

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 4/27 (14%)

Query: 48  LGATKCLLKELALEEIPKNTSIVWECP 74
           L ++KC+L++LA EE+ +    V ECP
Sbjct: 143 LRSSKCILRDLAEEELAR----VQECP 165


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
          protein K10E9.1 protein.
          Length = 1451

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 1  MNRLQRNRVNKLIKLIVMAILEEAHEEIS 29
          MN + R  + KL+K  +   L+ AH   S
Sbjct: 22 MNEVTRGNIQKLVKTGIQESLKSAHRNFS 50


>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
          protein, large subunitprotein 9 protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 25 HEEISVIKKNKIWVRKWINRRDKLGATKCLLKEL 58
          H E+  I K+ + VRKW   R +L A + +   +
Sbjct: 42 HMEMERIGKSTLRVRKWFGVRKELAAIRTVCSHI 75


>Z81096-1|CAB03161.2|  410|Caenorhabditis elegans Hypothetical
           protein K03H4.1 protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 4   LQRNRVNKLIKLIVMAILEEAHEEISVIKKNKIWVRKWINRRDKLGATKCLLKELALEEI 63
           LQ  +V +     V +IL+    ++  +    IW+   +NR D+   T C LK +  E++
Sbjct: 33  LQFGQVTRNANWRVYSILDHVFLKLEKLVDEPIWLLLNVNRSDQ--ETVCKLK-IIFEKL 89

Query: 64  PKNTSIVWECPKVV 77
            KN  IV    +++
Sbjct: 90  -KNLPIVHSSFRII 102


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)

Query: 22  EEAHEEISVIKKNKIWVRKWINRRDKLGATKCLLKELALEEIPKNTSIVWE 72
           E    E S+  +N +   + + R  K    K    +L LEEI   TS+  E
Sbjct: 538 ESTQNEYSLALENTVSELETMRREYKASVDKVCSLQLELEEIQHETSVELE 588


>AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK380.2 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 18  MAILEEAHEEISVIKKNKIWVRKWINRRD-KLGATKCLLKELALEEIPKNTSIVWEC 73
           +++L+E  +EI +++KN  +    +  +D ++G  +  L       + K    +++C
Sbjct: 176 VSLLQEIDKEIEILEKNSAFEESLLQEKDERIGLLETQLHAAEAINVAKANHELYKC 232


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,002
Number of Sequences: 27539
Number of extensions: 56912
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 14
length of query: 77
length of database: 12,573,161
effective HSP length: 57
effective length of query: 20
effective length of database: 11,003,438
effective search space: 220068760
effective search space used: 220068760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)