GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002771-TA|BGIBMGA002771-PA|IPR000859|CUB
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    30   1.5  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    29   3.4  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    28   4.5  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/32 (34%), Positives = 22/32 (68%)

Query: 108 RPFFKLRPIAVPVNISREDTNARSTRTPEYYL 139
           +PF+++ P  VP+N+ R+ TN +++ T  + L
Sbjct: 524 QPFYRVSPSIVPLNVIRKLTNRKTSFTDSHIL 555


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 785 FPRSLAVELIAVEAGNYFVSWLELSK--RYTCIFRLL 819
           FP SL+  L+A+ +  YF  W+E S    Y  I +LL
Sbjct: 423 FPNSLSPSLLALLSSPYFTKWIERSDTVMYREILKLL 459


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 370 APRFRVWFSVLKFYVTNALNPNLPEDEYCGSHFNIWDDQTGSYDPFSDKERSVQMSRATS 429
           +P+F + +S+        ++    E E+  S  N   D  G+   F+  + S +  R   
Sbjct: 20  SPKFSLNYSLTTVSDNVMIDTTRGEIEFSDSAVNGTMDIEGA-PKFAPAKTSAEKKRGAK 78

Query: 430 PQSVIVGRPPTNATLIARFCRERAPRTCEHALLKKSRACTKTES 473
           PQ   V  PP   T +     +  P   EH LL + R  TK+ S
Sbjct: 79  PQMRRVPIPPHRMTPLRNVWPKLYPPLVEHLLL-QVRMNTKSRS 121


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,048,755
Number of Sequences: 5004
Number of extensions: 183263
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 3
length of query: 819
length of database: 2,362,478
effective HSP length: 79
effective length of query: 740
effective length of database: 1,967,162
effective search space: 1455699880
effective search space used: 1455699880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)