GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002771-TA|BGIBMGA002771-PA|IPR000859|CUB
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0757 - 5840736-5842574                                           33   0.92 
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    32   2.1  
06_01_0680 + 4983054-4983080,4983243-4983590                           31   2.8  
10_06_0088 - 10538037-10539463,10539696-10539789                       31   3.7  
09_01_0033 + 546670-546885,547497-547637,548025-548291                 31   3.7  
01_06_0994 + 33653055-33653144,33653219-33653310,33653483-336535...    31   3.7  

>01_01_0757 - 5840736-5842574
          Length = 612

 Score = 33.1 bits (72), Expect = 0.92
 Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 513 PWGRGPCSRRFASRSFPEAPPDPPINFS-SPRDVFLYGRGGARNIS-CTYRFEANPGEVV 570
           P   GPCS    S SF      PP+  + SP D      GGA  IS     + A    V 
Sbjct: 56  PGSSGPCSTLLLSSSFGFTYTKPPVTAAYSPPDCLAAAGGGAPAISLAVLEWRATCRGVQ 115

Query: 571 RLRVWGVRSGG-RLCRSVHSAHAP 593
             R++GV  GG  L RS  +   P
Sbjct: 116 FDRIFGVWLGGVELLRSCTAEPRP 139


>01_01_0762 +
           5889925-5890136,5891110-5891273,5891755-5891878,
           5891941-5892073,5892629-5892732,5892867-5895780,
           5895876-5895965,5896251-5896355,5896633-5896740,
           5896826-5896876
          Length = 1334

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 18/59 (30%), Positives = 24/59 (40%)

Query: 101 GGTPLLDRPFFKLRPIAVPVNISREDTNARSTRTPEYYLGDLISGTYCSRIFSDCDRKN 159
           G +P+      KL  I         +TN  + RTP+  +G     T CS  F   D KN
Sbjct: 772 GNSPITSSFVGKLVGICPGSTSHSSETNQSTVRTPDTVIGQTEGSTGCSTSFEHSDHKN 830


>06_01_0680 + 4983054-4983080,4983243-4983590
          Length = 124

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 524 ASRSFPEAPPDPPINFSSPRDVFLYGRGGARNISC 558
           A  +FPE+PP      S PR+V  Y    A  + C
Sbjct: 75  AGLNFPESPPTVVARTSDPREVLAYATSHANRLGC 109


>10_06_0088 - 10538037-10539463,10539696-10539789
          Length = 506

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 740 ICPESPEQDTEELVEIFSEGW 760
           +CPE+  +  EE+ E+FS+GW
Sbjct: 459 LCPETQGKPLEEIEEVFSQGW 479


>09_01_0033 + 546670-546885,547497-547637,548025-548291
          Length = 207

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 435 VGRPPTNATLIARFCRERAPRTCEHALLKKSRACTKTESFLSKGDSLTLELKLTQ 489
           + +PPTN T   R C ER   T   ++   +R+     S+ ++ D   +E+KL +
Sbjct: 112 LSKPPTNKTSSLRLCGERVVATSRVSVDPAARSGASDVSYPTERDDGWMEVKLAE 166


>01_06_0994 +
           33653055-33653144,33653219-33653310,33653483-33653580,
           33653758-33653913,33654009-33654628,33654721-33654794,
           33654905-33655156,33655250-33655367,33655468-33655639,
           33655729-33656270
          Length = 737

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 509 QDGEPWGRGPCSRRFASRSFPEA---PPDPPINFSSPRDVFLYG 549
           Q GE WG   CSR+     F  A     D  I++ SPRDV  +G
Sbjct: 171 QVGEGWGSNNCSRKIIGARFYHAGVDEDDLKIDYLSPRDVNGHG 214


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,406,332
Number of Sequences: 37544
Number of extensions: 1297932
Number of successful extensions: 2554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2550
Number of HSP's gapped (non-prelim): 6
length of query: 819
length of database: 14,793,348
effective HSP length: 88
effective length of query: 731
effective length of database: 11,489,476
effective search space: 8398806956
effective search space used: 8398806956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)