GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002771-TA|BGIBMGA002771-PA|IPR000859|CUB
         (819 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   1.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   2.5  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    25   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   3.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   5.7  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   5.7  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 232 CDEVQDYVTVYDGYTTRD 249
           CD+ ++Y  VYD YT  D
Sbjct: 560 CDQCEEYEYVYDEYTCMD 577


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 329 GVLEHPQHSLPPNTTCLYHMQGIDTSGPSGRHIIYRRPSFSA 370
           G +   Q  +PP TTCL    G  +  PS +H+      FS+
Sbjct: 135 GDMTFDQTGIPP-TTCLVFSSGSVSCVPSVKHVAKCATDFSS 175



 Score = 23.8 bits (49), Expect = 5.7
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 48  CGTSWGPSIYYSETKSITLIIRLLHLSKEQNNYNFDFRM--AYKVLR 92
           C  ++G  ++  E  +I L  +  H+    NN  +DF++  A KVL+
Sbjct: 183 CRINFGSWVHSGEEVNIFLDKKGFHMDGYTNNSKWDFKVIKATKVLK 229


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 282 GTFLQPATLQSLHGFQLEVEVRFVDQQSPTYAKNKRTCEFWIRGTGRGV 330
           GTF  P T  S    Q  ++  F+ ++   + +    C FW   TGRG+
Sbjct: 164 GTFY-PLTGMSKETQQKLIDDHFLFKEGDRFLQAANACRFW--PTGRGI 209


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 513  PWGRGPCSRRFASRSFPEAPPDPPINFSS 541
            P GR   S     R+ P+ P  PPIN  +
Sbjct: 987  PAGRSVPSAELIVRTEPQRPAGPPINLEA 1015


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 513  PWGRGPCSRRFASRSFPEAPPDPPINFSS 541
            P GR   S     R+ P+ P  PPIN  +
Sbjct: 983  PAGRSVPSAELIVRTEPQRPAGPPINLEA 1011


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 232 CDEVQDYVTVYDGYTTRD 249
           CD+ ++Y  V+D YT  D
Sbjct: 470 CDQCEEYEYVHDEYTCMD 487


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 2/19 (10%)

Query: 173 RNLTCYYAVRQHEVPQGKH 191
           RN +CYY++++H   Q KH
Sbjct: 13  RNFSCYYSLKRHF--QDKH 29


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,157
Number of Sequences: 429
Number of extensions: 12299
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 8
length of query: 819
length of database: 140,377
effective HSP length: 63
effective length of query: 756
effective length of database: 113,350
effective search space: 85692600
effective search space used: 85692600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)