GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002770-TA|BGIBMGA002770-PA|IPR000618|Insect cuticle
protein
         (125 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    20   6.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       20   6.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    20   6.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           20   6.1  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    20   8.1  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 40 ESRLGNNVKGQYSLLE 55
          E RL NN+ G Y++LE
Sbjct: 4  EKRLLNNLLGPYNVLE 19


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 40 ESRLGNNVKGQYSLLE 55
          E RL NN+ G Y++LE
Sbjct: 4  EKRLLNNLLGPYNVLE 19


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 40 ESRLGNNVKGQYSLLE 55
          E RL NN+ G Y++LE
Sbjct: 4  EKRLLNNLLGPYNVLE 19


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 40 ESRLGNNVKGQYSLLE 55
          E RL NN+ G Y++LE
Sbjct: 4  EKRLLNNLLGPYNVLE 19


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 40 ESRLGNNVKGQYSLLE 55
          E RL NN+ G Y++LE
Sbjct: 4  EKRLLNNLLGPYNVLE 19


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu
          protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 20 YSNFAYSVADPYTGDFKNQV 39
          Y +  +S+  PY   F N V
Sbjct: 55 YESCRFSINQPYLNHFDNSV 74


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 29 DPYTGDFKNQVESRLGNNVKGQYSLLESDG 58
          D  T   +N+V  R GN V    S   SDG
Sbjct: 8  DTRTVRLRNRVGKRKGNVVADILSRYPSDG 37


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
          transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 20 YSNFAYSVADPYTGDFKNQV 39
          Y +  +S+  PY   F N V
Sbjct: 55 YESCRFSINQPYLNHFDNSV 74


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 20 YSNFAYSVADPYTGDFKNQV 39
          Y +  +S+  PY   F N V
Sbjct: 55 YESCRFSINQPYLNHFDNSV 74


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 108 GALPYNGYFPYN 119
           G  P  GY+PY+
Sbjct: 59  GLQPTTGYYPYD 70


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.139    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,670
Number of Sequences: 317
Number of extensions: 615
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 125
length of database: 114,650
effective HSP length: 50
effective length of query: 75
effective length of database: 98,800
effective search space:  7410000
effective search space used:  7410000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)