GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002770-TA|BGIBMGA002770-PA|IPR000618|Insect cuticle
protein
         (125 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   1.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   2.7  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   3.5  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    25   3.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    24   6.2  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    24   6.2  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 26  SVADPYTGDFKNQVESRLGNNVKGQYSLLESDGTRRTVDYAAGA 69
           +V+D  + D +NQ +S   N V    S L   G+  T  Y +G+
Sbjct: 95  NVSDVRSYDERNQKKSAFENFVSSMSSFLTGGGSSPTSSYGSGS 138


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 1    MFVKFXXXXXXXXXXSAGDYSNFAYSVADPYTGDFKN 37
            ++ K            A D  N++ ++ +PYT DF++
Sbjct: 2833 LYTKLLNASINVTILDASDPGNYSNNIENPYTKDFED 2869


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 56 SDGTRRTVDYAAGAEGFNAVVRKDPAL 82
          +  +  TVDYAAG+ G   +V   PA+
Sbjct: 54 ASSSTETVDYAAGSVGIATLVDAVPAI 80


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 56 SDGTRRTVDYAAGAEGFNAVVRKDPAL 82
          +  +  TVDYAAG+ G   +V   PA+
Sbjct: 54 ASSSTETVDYAAGSVGIATLVDAVPAI 80


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 21  SNFAYSVADPYTGDFKNQVESRLGNN 46
           SN   + A PY+  F N VE+R  N+
Sbjct: 613 SNAGETTALPYSSRFMNPVENRSANS 638


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 40  ESRLGNNVKGQYSLLESDGTRRTVDYAAGAE 70
           +S +G+++ G YS+LE+ G     D     E
Sbjct: 399 DSMVGDSIHGLYSILETSGAEIVGDIKRAQE 429


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.139    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,816
Number of Sequences: 5004
Number of extensions: 13285
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 6
length of query: 125
length of database: 2,362,478
effective HSP length: 65
effective length of query: 60
effective length of database: 2,037,218
effective search space: 122233080
effective search space used: 122233080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)