GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002770-TA|BGIBMGA002770-PA|IPR000618|Insect cuticle
protein
         (125 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical pr...    30   0.42 
Z74031-9|CAA98452.1|  378|Caenorhabditis elegans Hypothetical pr...    30   0.56 

>Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical
           protein R05H10.6 protein.
          Length = 1364

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 36  KNQVESRLGNNVKGQYSL--LESDGTRRTVDYAAGAEGFN 73
           K  V+  + ++ KG  SL  +E DGT R+ D+ AG+EG +
Sbjct: 760 KELVKFEMTSDEKGMSSLFGIEEDGTIRSKDWLAGSEGMH 799


>Z74031-9|CAA98452.1|  378|Caenorhabditis elegans Hypothetical
          protein F32D8.7 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 16 SAGDYSNFAYSVADPYTGDFKNQVESR 42
          ++ DY+N A S  DP+T DF  Q+ +R
Sbjct: 62 TSSDYTNIATSKCDPHTCDFPRQICAR 88


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.139    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,437
Number of Sequences: 27539
Number of extensions: 67965
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 2
length of query: 125
length of database: 12,573,161
effective HSP length: 73
effective length of query: 52
effective length of database: 10,562,814
effective search space: 549266328
effective search space used: 549266328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)