GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002769-TA|BGIBMGA002769-PA|IPR007822|Lanthionine
synthetase C-like, IPR008928|Six-hairpin glycosidase
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    29   1.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   3.6  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    27   4.7  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   6.2  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    27   6.2  

>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/44 (29%), Positives = 28/44 (63%)

Query: 70  LSENKSAYLAKALEYLSPALEVSAGDKTSFLLGDAGTYALSTVL 113
           ++ + S+Y+A     ++ + E+SAG  TS++   + + ALS+V+
Sbjct: 189 VATSTSSYVAPVSSSVASSSEISAGSATSYVPTSSSSIALSSVV 232


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 271 KLVHWCHGAPGVVYLMAKAYLVYQEQKYLEACIKAAELI 309
           +L+ W +  P  VYL A  YL  +E      C K   L+
Sbjct: 830 QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV 868


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 4   YFENPYEDYERGAVAIYIDTICGQI-NEYLENITKRLPAT 42
           YFE+ ++ YERG VA++   +  ++ N YL    KR   T
Sbjct: 529 YFEDSFKIYERG-VALFSYPVAFELWNLYLTKFVKRYQGT 567


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 328 NGYVFLLLYRLTDEEKYLYRAKMFAE----FLNTEAFNRDAKLPDNP 370
           N Y  + LY  + +E+ + + ++ A+     +NT   N+ A LPD P
Sbjct: 394 NNYEDIPLYGPSKDEELIKKEELEADTDLGLINTSEINQPANLPDEP 440


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 57  VSFMFYHLAKNLRLSENKSAYLAKALEYLS 86
           V+F+F H +K L L E    YL+ A  ++S
Sbjct: 447 VTFLFAHESKGLTLEEINELYLSDAKPWMS 476


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,867
Number of Sequences: 5004
Number of extensions: 83619
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 5
length of query: 404
length of database: 2,362,478
effective HSP length: 74
effective length of query: 330
effective length of database: 1,992,182
effective search space: 657420060
effective search space used: 657420060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)