Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002769-TA|BGIBMGA002769-PA|IPR007822|Lanthionine
synthetase C-like, IPR008928|Six-hairpin glycosidase
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0514 + 18465474-18465760,18465888-18465978,18466670-184667... 201 9e-52
04_04_0591 + 26472390-26472578,26472666-26472865,26472969-264730... 198 6e-51
06_01_0599 - 4327671-4330034 30 3.8
03_01_0296 + 2284385-2285629,2287632-2288594 29 5.0
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 6.6
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 29 6.6
04_04_0986 - 29931302-29932834 29 8.8
>10_08_0514 +
18465474-18465760,18465888-18465978,18466670-18466767,
18466852-18466949,18468192-18468321,18468410-18468597,
18470291-18470323,18470627-18471000,18471116-18471294,
18471421-18471532,18471655-18471771,18471875-18472189,
18472405-18472743
Length = 786
Score = 201 bits (490), Expect = 9e-52
Identities = 130/361 (36%), Positives = 190/361 (52%), Gaps = 25/361 (6%)
Query: 41 ATRSKVDGGLYVGVTGVSFMFYHLAKNLRLSENKSAYLAKALEYLSPALEVSAG-DKTSF 99
A R D LY G G + + + K+ +++ N+ A LA A + + S G +F
Sbjct: 442 ARRQVTDYTLYTGALGTALLLF---KSFQVTGNR-ADLALAGDIVKECDAASRGLPFLTF 497
Query: 100 LLGDAGTYALSTVLYKEMGDGSFKESLKQYQSLFKLYLNPKFLKCGGDEFFVGRAGYLAG 159
+ G AG AL V+ K D L Y S F + + + +E GRAGYL
Sbjct: 498 ICGRAGVCALGAVIAKHCNDQLL---LTHYLSSFDEIIVTEKVP---NELLYGRAGYLWA 551
Query: 160 ALWLTRELQTPILSPDEWFQLCNVIVDSGREYSSKFKSPCPLMYHYYNTEYLGAAHGLSF 219
L+L L + + + I+D GR+ + K CPLMY ++ +Y GAAHGL+
Sbjct: 552 CLFLNTHLGEKTIPHEHITSVAKDIIDEGRKLAKK--GNCPLMYEWHGKKYWGAAHGLAG 609
Query: 220 ILQMLLTVPGYISHNKSAAHDIKTTIDYMVFLQTDEGNWPACMEERTMKEHKLVHWCHGA 279
I+ +L+ + D+K T+ YM+ + GN+P+ + +LVHWCHGA
Sbjct: 610 IMHVLM----HTELKLDEKDDVKNTLLYMIRNRYPTGNYPS---SEGSESDRLVHWCHGA 662
Query: 280 PGVVYLMAKAYLVYQEQKYLEACIKAAELIWKKGLLFKGPGICHGVSGNGYVFLLLYRLT 339
PGV +AKAY V+ ++ + + +AAE++W +GLL K GICHGVSGN YVFL LYRLT
Sbjct: 663 PGVALTLAKAYQVFHDEHFKQTAAEAAEVVWNRGLL-KRVGICHGVSGNAYVFLSLYRLT 721
Query: 340 DEEKYLYRAKMFAEFL--NTEAFNRDAKL--PDNPESLYEGAAGAVCFLSDLLYVDKAEF 395
+YLYRAK FA FL + D + D+P SL+EG AG L D++ +++F
Sbjct: 722 GNVEYLYRAKAFACFLLEKADQLIADGAMHGGDHPFSLFEGRAGMAYLLLDMVSPSESKF 781
Query: 396 P 396
P
Sbjct: 782 P 782
>04_04_0591 +
26472390-26472578,26472666-26472865,26472969-26473080,
26475517-26475633,26475752-26476063,26476172-26476510
Length = 422
Score = 198 bits (483), Expect = 6e-51
Identities = 131/355 (36%), Positives = 179/355 (50%), Gaps = 26/355 (7%)
Query: 47 DGGLYVGVTGVSFMFYHLAKNLRLSENKSAYLAKALEYLSPALEVSAGDK-TSFLLGDAG 105
D LY G G + + + L A LA E ++ S G + +F+ G AG
Sbjct: 85 DFTLYTGALGTALLLFRAY----LVTGDRADLATCAEIVAACDAASMGAEIATFICGRAG 140
Query: 106 TYALSTVLYKEMGDGSFKESLKQYQSLFKLYLNPKFLKCGGDEFFVGRAGYLAGALWLTR 165
AL V+ K GD + + Y S FK K DE GRAGYL +L +
Sbjct: 141 VCALGAVVAKHAGD---EAGVAHYLSAFK---EIKIHSKSPDELLYGRAGYLWACTFLNK 194
Query: 166 ELQTPILSPDEWFQLCNVIVDSGREYSSKFKSPCPLMYHYYNTEYLGAAHGLSFILQMLL 225
L + P + I+ GR S+ CPLMY +Y +Y GAAHGLS I+ +LL
Sbjct: 195 HLGDNTIPPTTTDTVMRDIIRDGRTLST---IGCPLMYEWYGEKYWGAAHGLSGIMHVLL 251
Query: 226 TVPGYISHNKSAAHDIKTTIDYMVFLQTDEGNWPACMEERTMKEHKLVHWCHGAPGVVYL 285
+ K +K T+ YM+ + GN+P E+ K + VHWCHGAPG+
Sbjct: 252 DM----DLTKDDTECVKGTLRYMIQNRFPSGNYPVTEED---KHDRFVHWCHGAPGISLT 304
Query: 286 MAKAYLVYQEQKYLEACIKAAELIWKKGLLFKGPGICHGVSGNGYVFLLLYRLTDEEKYL 345
+AKA V+ E+++LEA +AAE++W +GLL K GICHGVSGN Y FL L+RLT ++++L
Sbjct: 305 LAKASQVFPEERFLEAIAEAAEVVWNRGLL-KRVGICHGVSGNAYTFLALFRLTKKKEHL 363
Query: 346 YRAKMFAEFLNTEAFNRDA----KLPDNPESLYEGAAGAVCFLSDLLYVDKAEFP 396
YRAK FA FL A A D P SL+EG G D++ + FP
Sbjct: 364 YRAKAFACFLLDRAKQLIADGIMHSGDEPYSLFEGQVGMAYLFLDMINPLDSRFP 418
>06_01_0599 - 4327671-4330034
Length = 787
Score = 29.9 bits (64), Expect = 3.8
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 111 TVLYKEMGDGSFKESLKQYQSLFKLY-LNPKFLKCGGDEFFVGRAGYLAGALWLTRELQT 169
+VLY G +E K ++S+ Y +NP C +GRAG L A L E
Sbjct: 520 SVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPK 579
Query: 170 PILSPDEWFQL---CNVIVDS 187
+ P W L C V DS
Sbjct: 580 SAVGPGVWGALLGACMVHKDS 600
>03_01_0296 + 2284385-2285629,2287632-2288594
Length = 735
Score = 29.5 bits (63), Expect = 5.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 144 CGGDEFFVGRAGYLAGALWLTRELQTPILSPDEWFQL 180
CGGD+ + + LA AL REL P W +L
Sbjct: 619 CGGDDCMIRKGEALAAALLKGRELNKSSKEPGMWTEL 655
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 10 EDYERGAVAIYIDTICGQ-INEYLENITKRLPATRSKVDGGLYVGVTGVSFMFYHLAKN 67
E Y + V +C Q + +Y + T + S ++GG V V+ V M+ HLAK+
Sbjct: 1947 EHYSQARVKFKYGKLCLQALQQYKGDATHFVLEIISTIEGGPPVDVSSVRSMYEHLAKS 2005
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 4 YFENPYEDY----ERGAVAIYIDTICGQINEYLENITKRLPATRSKVDGGLYVGVTGVSF 59
YF Y+D +R ++ ID G +N ++ + L + + D G Y G G S+
Sbjct: 87 YFMVQYDDILFHEKRRVTSVTIDFTFG-LNSCAGSVIRDLHIAKQEEDIGFYAGFVGASY 145
Query: 60 MF 61
MF
Sbjct: 146 MF 147
>04_04_0986 - 29931302-29932834
Length = 510
Score = 28.7 bits (61), Expect = 8.8
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 15 GAVAIYIDTICGQINEYLENITKRLPATRSKVDGGLYVG----VTGVSFMFYHLAKNLRL 70
GA A D G ++ L NI RLPA + L VTG F HL L
Sbjct: 37 GAPAQSADDAGGMCDDVLRNIFSRLPARAAVACTALSKHHRRLVTGAEFRRLHLLLGAPL 96
Query: 71 SENKSAYLAKA 81
AYLA A
Sbjct: 97 PRPHVAYLATA 107
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,687
Number of Sequences: 37544
Number of extensions: 520282
Number of successful extensions: 954
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 7
length of query: 404
length of database: 14,793,348
effective HSP length: 84
effective length of query: 320
effective length of database: 11,639,652
effective search space: 3724688640
effective search space used: 3724688640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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